RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 ZNF804BA4D1E1 1349 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 TMEM120BA0PK00 339 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 PPFIA2O75334 1257 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 GCNT3O95395 438 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 SLURP2P0DP57 97 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 PCK1P35558 622 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 STAT1P42224 750 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 TTBK2Q6IQ55 1244 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 CPNE8Q86YQ8 564 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 PWWP2AQ96N64 755 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 EPB41L4BQ9H329 900 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 ETNK1Q9HBU6 452 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 SPATS2LQ9NUQ6 558 aaKnown RBP10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 CCDC87Q9NVE4 849 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 SLC12A4Q9UP95 1085 aa10.65□□□□□ -0.71
PTCHD4-202ENST00000398738 TCRBV7S2A1N4TA0A589 114 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 SRRM3A6NNA2 597 aaPredicted RBP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 ANKRD63C9JTQ0 380 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 SNX3O60493 162 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 MMP13P45452 471 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 LACTBP83111 547 aaPredicted RBP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 PSMD2Q13200 908 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 PIGWQ7Z7B1 504 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 SYCE1Q8N0S2 351 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 ARHGEF2Q92974 986 aaKnown RBP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 BTBD6Q96KE9 485 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 TMEM237Q96Q45 408 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 SUCLA2Q9P2R7 463 aaPredicted RBP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 USP15Q9Y4E8 981 aaPredicted RBP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 CHD4Q14839 1912 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 DUOX1Q9NRD9 1551 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 GNA14O95837 355 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 TRIM49P0CI25 452 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 TRIM49CP0CI26 452 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 RFC4P35249 363 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 CDK8P49336 464 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 ERFP50548 548 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 PDE6CP51160 858 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 ATP11AP98196 1134 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 ANKRD20A2Q5SQ80 823 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 ANKRD20A1Q5TYW2 823 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 ANKRD20A3Q5VUR7 823 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 PTCRAQ6ISU1 281 aaPredicted RBP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 PHLDB3Q6NSJ2 640 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 ZNF449Q6P9G9 518 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 PHLDB2Q86SQ0 1253 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 LNX1Q8TBB1 728 aaPredicted RBP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 MAGEC3Q8TD91 643 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 ZNF483Q8TF39 744 aaPredicted RBP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 ZNF516Q92618 1163 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 CEP63Q96MT8 703 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 USB1Q9BQ65 265 aaKnown RBP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 MTRF1LQ9UGC7 380 aaKnown RBP10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 GLI3P10071 1580 aa10.64□□□□□ -0.71
PTCHD4-202ENST00000398738 SUN1O94901 812 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 TNFAIP3P21580 790 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 MSH2P43246 934 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 CYP2J2P51589 502 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 SNAP25P60880 206 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 LSM11P83369 360 aaKnown RBP eCLIP10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 FAM160A2Q8N612 972 aaPredicted RBP10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 FITM2Q8N6M3 262 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 P3H4Q92791 437 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 HAS1Q92839 578 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 THAP11Q96EK4 314 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 RMDN2Q96LZ7 410 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 ZCWPW1Q9H0M4 648 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 EBF2Q9HAK2 575 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 MYH7BA7E2Y1 1941 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 NUP188Q5SRE5 1749 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 ABCB11O95342 1321 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 ASAP2O43150 1006 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 EDIL3O43854 480 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 CAMTA2O94983 1202 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 CYP11B2P19099 503 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 RPS8P62241 208 aaKnown RBP10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 KLRC3Q07444 240 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 DRAP1Q14919 205 aaPredicted RBP10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 CNGA2Q16280 664 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 SBK1Q52WX2 424 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 C6orf118Q5T5N4 469 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 DUPD1Q68J44 220 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 CAPN12Q6ZSI9 719 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 KCTD1Q719H9 257 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 EXOC3L1Q86VI1 746 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 VSIG1Q86XK7 387 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 RNF217Q8TC41 542 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 FAM118BQ9BPY3 351 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 LRRC27Q9C0I9 530 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 KCTD10Q9H3F6 313 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 ZDHHC18Q9NUE0 388 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 USP40Q9NVE5 1235 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 ZMYND8Q9ULU4 1186 aaPredicted RBP10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 NRAPQ86VF7 1730 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 KIAA0391O15091 583 aaKnown RBP10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 ATP2A2P16615 1042 aaKnown RBP10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 STX2P32856 288 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 SLC8A3P57103 927 aa10.63□□□□□ -0.71
PTCHD4-202ENST00000398738 PTENP60484 403 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms