RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 NAALADL2Q58DX5 795 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 TMEM270Q6UE05 265 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 RFX8Q6ZV50 586 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 RAPH1Q70E73 1250 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 GIMAP8Q8ND71 665 aaPredicted RBP11.51□□□□□ -0.57
CCDC40-204ENST00000397545 FAM213AQ9BRX8 229 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 TRIM4Q9C037 500 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 SPATS2LQ9NUQ6 558 aaKnown RBP11.51□□□□□ -0.57
CCDC40-204ENST00000397545 CNTNAP4Q9C0A0 1308 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 LRRIQ3A6PVS8 624 aaPredicted RBP11.51□□□□□ -0.57
CCDC40-204ENST00000397545 CFLARO15519 480 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 GPC4O75487 556 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 GSTA1P08263 222 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 GSTA2P09210 222 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 MARK3P27448 753 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 GABPAQ06546 454 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 PPP6R3Q5H9R7 873 aaPredicted RBP11.51□□□□□ -0.57
CCDC40-204ENST00000397545 LMBRD2Q68DH5 695 aaPredicted RBP11.51□□□□□ -0.57
CCDC40-204ENST00000397545 CENPUQ71F23 418 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 PCGF5Q86SE9 256 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 LRRC43Q8N309 656 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 DNAAF3Q8N9W5 541 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 CDKL2Q92772 493 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 KLC4Q9NSK0 619 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 PPARGC1AQ9UBK2 798 aaKnown RBP11.51□□□□□ -0.57
CCDC40-204ENST00000397545 PNMA2Q9UL42 364 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 L1RE1Q9UN81 338 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 EMSYQ7Z589 1322 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 MYH7P12883 1935 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 TRPA1O75762 1119 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 LSP1P33241 339 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 KCNJ1P48048 391 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 SPARCL1Q14515 664 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 RINT1Q6NUQ1 792 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 AFAP1L2Q8N4X5 818 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 ZNF473Q8WTR7 871 aaKnown RBP11.51□□□□□ -0.57
CCDC40-204ENST00000397545 INTS2Q9H0H0 1204 aaKnown RBP11.51□□□□□ -0.57
CCDC40-204ENST00000397545 PCSK1NQ9UHG2 260 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 PPP1R9AQ9ULJ8 1098 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 ITIH6Q6UXX5 1313 aa11.51□□□□□ -0.57
CCDC40-204ENST00000397545 ABL1P00519 1130 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 UCHL3P15374 230 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 NCF2P19878 526 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-204ENST00000397545 ECE1P42892 770 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 ITKQ08881 620 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 DBN1Q16643 649 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 SLC10A5Q5PT55 438 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 TMEM179Q6ZVK1 233 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 EPM2AIP1Q7L775 607 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-204ENST00000397545 CEP120Q8N960 986 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 RFFLQ8WZ73 363 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 HSPH1Q92598 858 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 YIPF3Q9GZM5 350 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 DBR1Q9UK59 544 aaKnown RBP11.5□□□□□ -0.57
CCDC40-204ENST00000397545 COL16A1Q07092 1604 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-204ENST00000397545 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.5□□□□□ -0.57
CCDC40-204ENST00000397545 PSMD14O00487 310 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 GADL1Q6ZQY3 521 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 ERICH1Q86X53 443 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 SLC30A5Q8TAD4 765 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 FBXO41Q8TF61 875 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 HAUS2Q9NVX0 235 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 CAPN6Q9Y6Q1 641 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 VAMP7P51809 220 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 AP3B2Q13367 1082 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 MMEL1Q495T6 779 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 PPWD1Q96BP3 646 aaKnown RBP11.5□□□□□ -0.57
CCDC40-204ENST00000397545 SHISA4Q96DD7 197 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 C9orf72Q96LT7 481 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 NLRP4Q96MN2 994 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 FAM118BQ9BPY3 351 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 ZNF341Q9BYN7 854 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 VIPAS39Q9H9C1 493 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 SCAF8Q9UPN6 1271 aaKnown RBP11.5□□□□□ -0.57
CCDC40-204ENST00000397545 INPP5FQ9Y2H2 1132 aa11.5□□□□□ -0.57
CCDC40-204ENST00000397545 F5H423 210 aaPredicted RBP11.49□□□□□ -0.57
CCDC40-204ENST00000397545 CYP26A1O43174 497 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 ZNF18P17022 549 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 CRKP46108 304 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 TMPRSS15P98073 1019 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 MAP7Q14244 749 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 DNAAF5Q86Y56 855 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 CNKSR1Q969H4 720 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 ARL8AQ96BM9 186 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 FAM20AQ96MK3 541 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 EIF2AK1Q9BQI3 630 aaKnown RBP11.49□□□□□ -0.57
CCDC40-204ENST00000397545 MSTO1Q9BUK6 570 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 NACA2Q9H009 215 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 COL4A1P02462 1669 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 DENND3A2RUS2 1198 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 TCP11X1B4DZS4 312 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 GYG2O15488 501 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 KITP10721 976 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 MAP3K21Q5TCX8 1036 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 SULF1Q8IWU6 871 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 TGS1Q96RS0 853 aaKnown RBP11.49□□□□□ -0.57
CCDC40-204ENST00000397545 HEY1Q9Y5J3 304 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 ABCB11O95342 1321 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 PI4K2BG5E9Z4 385 aa11.49□□□□□ -0.57
CCDC40-204ENST00000397545 SH3BP5O60239 455 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms