RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 PPP2R5AQ15172 486 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 ZNF618Q5T7W0 954 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 RINT1Q6NUQ1 792 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 RUFY4Q6ZNE9 571 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 C1orf186Q6ZWK4 172 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 PPFIBP1Q86W92 1011 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 RAD54LQ92698 747 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 DHTKD1Q96HY7 919 aaPredicted RBP11.19□□□□□ -0.62
VPS53-202ENST00000389040 BLOC1S4Q9NUP1 217 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 SUCLA2Q9P2R7 463 aaPredicted RBP11.19□□□□□ -0.62
VPS53-202ENST00000389040 ODF2LQ9ULJ1 636 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 AKT3Q9Y243 479 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 TRPV2Q9Y5S1 764 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 ITIH6Q6UXX5 1313 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 AKR1B15C9JRZ8 316 aaPredicted RBP11.19□□□□□ -0.62
VPS53-202ENST00000389040 N4BP3O15049 544 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 GPR32O75388 356 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 TUBB4AP04350 444 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 PPP1R2P41236 205 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 COPB1P53618 953 aaKnown RBP11.19□□□□□ -0.62
VPS53-202ENST00000389040 FPGSQ05932 587 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 MGAT3Q09327 533 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 CNNM4Q6P4Q7 775 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 TRAF7Q6Q0C0 670 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 SLC17A8Q8NDX2 589 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 PRPF31Q8WWY3 499 aaKnown RBP11.19□□□□□ -0.62
VPS53-202ENST00000389040 PANX2Q96RD6 677 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 GCOM2Q9BZD3 368 aaPredicted RBP11.19□□□□□ -0.62
VPS53-202ENST00000389040 FAM49AQ9H0Q0 323 aaPredicted RBP11.19□□□□□ -0.62
VPS53-202ENST00000389040 COL4A3BPQ9Y5P4 624 aa11.19□□□□□ -0.62
VPS53-202ENST00000389040 TMEM150BA6NC51 233 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 H0YCG3 227 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 ZSCAN12O43309 604 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 CTIFO43310 598 aaKnown RBP11.18□□□□□ -0.62
VPS53-202ENST00000389040 CHRNA1P02708 482 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 EIF4BP23588 611 aaKnown RBP11.18□□□□□ -0.62
VPS53-202ENST00000389040 EEF1GP26641 437 aaKnown RBP11.18□□□□□ -0.62
VPS53-202ENST00000389040 CYP2C18P33260 490 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 CLCN3P51790 818 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 PMS1P54277 932 aaKnown RBP11.18□□□□□ -0.62
VPS53-202ENST00000389040 STK4Q13043 487 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 PSRC1Q6PGN9 363 aaPredicted RBP11.18□□□□□ -0.62
VPS53-202ENST00000389040 KIF18AQ8NI77 898 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 NOC3LQ8WTT2 800 aaKnown RBP11.18□□□□□ -0.62
VPS53-202ENST00000389040 KCNN1Q92952 543 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 IFT74Q96LB3 600 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 NTPCRQ9BSD7 190 aaKnown RBP11.18□□□□□ -0.62
VPS53-202ENST00000389040 FTHL17Q9BXU8 183 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 WNT8AQ9H1J5 351 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 ADAMTS10Q9H324 1103 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 THAP9Q9H5L6 903 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 IL23AQ9NPF7 189 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 XPNPEP1Q9NQW7 623 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 TAB2Q9NYJ8 693 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 LARSQ9P2J5 1176 aaKnown RBP11.18□□□□□ -0.62
VPS53-202ENST00000389040 DOCK5Q9H7D0 1870 aa11.18□□□□□ -0.62
VPS53-202ENST00000389040 BICDL2A1A5D9 508 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 MYMKA6NI61 221 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 GPR182O15218 404 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 USO1O60763 962 aaKnown RBP11.17□□□□□ -0.62
VPS53-202ENST00000389040 BAIAP3O94812 1187 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 ACTN1P12814 892 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 GPC3P51654 580 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 EFNA5P52803 228 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 NLRP11P59045 1033 aaKnown RBP11.17□□□□□ -0.62
VPS53-202ENST00000389040 LAMTOR4Q0VGL1 99 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 MCM6Q14566 821 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 COBLL1Q53SF7 1204 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 TTI2Q6NXR4 508 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 TSHZ1Q6ZSZ6 1077 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 KCNK18Q7Z418 384 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 SRGAP1Q7Z6B7 1085 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 IRF2BP1Q8IU81 584 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 LRRC71Q8N4P6 559 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 PPP1R13LQ8WUF5 828 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 BADQ92934 168 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 P2RX5Q93086 422 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 WNT8BQ93098 351 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 PPP1R12CQ9BZL4 782 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 C2orf40Q9H1Z8 148 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 VPS16Q9H269 839 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 MTIF3Q9H2K0 278 aaKnown RBP11.17□□□□□ -0.62
VPS53-202ENST00000389040 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.17□□□□□ -0.624e-6■■■□□ 17.1
VPS53-202ENST00000389040 CDY2AQ9Y6F7 541 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 ABHD14A-ACY1A0A1B0GW23 586 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 PVALEFA0A1B0GWK0 134 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 A0A1W2PPC1 479 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 H0YGN5 161 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 MFAP3LO75121 409 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 TPM1P09493 284 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 CCNE1P24864 410 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 ITGB8P26012 769 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 NAMPTP43490 491 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 PHKA2P46019 1235 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 SMTNP53814 917 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 NCBP1Q09161 790 aaKnown RBP11.17□□□□□ -0.62
VPS53-202ENST00000389040 FBXO47Q5MNV8 452 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 FAM102BQ5T8I3 360 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 UNC13DQ70J99 1090 aa11.17□□□□□ -0.62
VPS53-202ENST00000389040 RHPN2Q8IUC4 686 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms