RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 WNT8AQ9H1J5 351 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 SUFUQ9UMX1 484 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 TRIM28Q13263 835 aaKnown RBP6.99□□□□□ -1.29
SMC1A-202ENST00000375340 COG2Q14746 738 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 IZUMO3Q5VZ72 239 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 TMEM179Q6ZVK1 233 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 CENPUQ71F23 418 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ATP2A3Q93084 1043 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 COA1Q9GZY4 146 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ZNF408Q9H9D4 720 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 JMJD4Q9H9V9 463 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 APEX2Q9UBZ4 518 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 PI4K2BG5E9Z4 385 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 WNT7AO00755 349 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 BBOX1O75936 387 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 PON1P27169 355 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 PDIA2Q13087 525 aaKnown RBP6.99□□□□□ -1.29
SMC1A-202ENST00000375340 MTM1Q13496 603 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 KIAA1755Q5JYT7 1200 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 KLHDC7AQ5VTJ3 777 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 PHLDB3Q6NSJ2 640 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 KDM7AQ6ZMT4 941 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 LONP2Q86WA8 852 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 SULF1Q8IWU6 871 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 KCND1Q9NSA2 647 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 HSPBP1Q9NZL4 362 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 CLEC11AQ9Y240 323 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 RPS6KA4O75676 772 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 HSPA6P17066 643 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 BPIFB4P59827 614 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 GABPAQ06546 454 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ZNF543Q08ER8 600 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 PAPD7Q5XG87 772 aaKnown RBP6.99□□□□□ -1.29
SMC1A-202ENST00000375340 TRIM59Q8IWR1 403 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ACSF2Q96CM8 615 aaPredicted RBP6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ADPGKQ9BRR6 497 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 AKT3Q9Y243 479 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ITKQ08881 620 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 TROAPQ12815 778 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 SPARCL1Q14515 664 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 SBK1Q52WX2 424 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ECE1P42892 770 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 SLC8A3P57103 927 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 NFIXQ14938 502 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 TTMPQ5BVD1 217 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 XPO6Q96QU8 1125 aaKnown RBP6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ISCUQ9H1K1 167 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ATP6V0A4Q9HBG4 840 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 STK32BQ9NY57 414 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 WDR93Q6P2C0 686 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 C1orf228Q6PIY5 440 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 CATSPER3Q86XQ3 398 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 JAMLQ86YT9 394 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 LRRC43Q8N309 656 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 SLC17A8Q8NDX2 589 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 RAPGEF5Q92565 580 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ATP6V0A1Q93050 837 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 RIOK1Q9BRS2 568 aaKnown RBP6.99□□□□□ -1.29
SMC1A-202ENST00000375340 THAP2Q9H0W7 228 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 ADAM22Q9P0K1 906 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 CHUKO15111 745 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 RTN2O75298 545 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 MED24O75448 989 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 RAD23BP54727 409 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 PDE1CQ14123 709 aaPredicted RBP6.99□□□□□ -1.29
SMC1A-202ENST00000375340 PDIA5Q14554 519 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 FAM160B1Q5W0V3 765 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 RAPH1Q70E73 1250 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 XXYLT1Q8NBI6 393 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 NEDD1Q8NHV4 660 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 CCT6BQ92526 530 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 PI4K2AQ9BTU6 479 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 NPHS2Q9NP85 383 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 IL17RBQ9NRM6 502 aa6.99□□□□□ -1.29
SMC1A-202ENST00000375340 BRAFP15056 766 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 SCP2P22307 547 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 TMBIM4Q9HC24 238 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 MRPL47Q9HD33 250 aaKnown RBP6.98□□□□□ -1.29
SMC1A-202ENST00000375340 L1RE1Q9UN81 338 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 TJP3O95049 919 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 SYF2O95926 243 aaKnown RBP6.98□□□□□ -1.29
SMC1A-202ENST00000375340 ORC2Q13416 577 aaPredicted RBP6.98□□□□□ -1.29
SMC1A-202ENST00000375340 DHX34Q14147 1143 aaKnown RBP6.98□□□□□ -1.29
SMC1A-202ENST00000375340 ARHGAP20Q9P2F6 1191 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 MYO3BQ8WXR4 1341 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 E2F8A0AVK6 867 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 IGF2BP3O00425 579 aaKnown RBP eCLIP6.98□□□□□ -1.29
SMC1A-202ENST00000375340 ZRANB2O95218 330 aaKnown RBP eCLIP6.98□□□□□ -1.29
SMC1A-202ENST00000375340 GNA15P30679 374 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 OR6B2Q6IFH4 312 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 FBXO33Q7Z6M2 555 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 RASSF3Q86WH2 238 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 TSEN2Q8NCE0 465 aaKnown RBP6.98□□□□□ -1.29
SMC1A-202ENST00000375340 FBXO41Q8TF61 875 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 PPP1R36Q96LQ0 422 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 PARP4Q9UKK3 1724 aaKnown RBP6.98□□□□□ -1.29
SMC1A-202ENST00000375340 H0YCG3 227 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 FXR2P51116 673 aaKnown RBP eCLIP6.98□□□□□ -1.297e-7■■■■□ 24.5
SMC1A-202ENST00000375340 ARSEP51690 589 aa6.98□□□□□ -1.29
SMC1A-202ENST00000375340 RGS9BPQ6ZS82 235 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms