RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 RHOT2Q8IXI1 618 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 UBL4BQ8N7F7 174 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 CERKQ8TCT0 537 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 GGT7Q9UJ14 662 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 CTNNA2P26232 953 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 TCP10Q12799 353 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 MESDQ14696 234 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 FAM178BQ8IXR5 827 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 HOOK2Q96ED9 719 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 PCYOX1Q9UHG3 505 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 AGAP1Q9UPQ3 857 aa17.66■□□□□ 0.42
SDC4-201ENST00000372733 COMTP21964 271 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 CIITAP33076 1130 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 AUHQ13825 339 aaKnown RBP17.65■□□□□ 0.42
SDC4-201ENST00000372733 SLC15A2Q16348 729 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 NFIL3Q16649 462 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 OTUD6AQ7L8S5 288 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 TRPM8Q7Z2W7 1104 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 TBC1D1Q86TI0 1168 aaPredicted RBP17.65■□□□□ 0.42
SDC4-201ENST00000372733 ARHGEF19Q8IW93 802 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 MGARPQ8TDB4 240 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 HSD17B14Q9BPX1 270 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 DMAC2Q9NW81 257 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 MIF4GDA9UHW6 222 aaKnown RBP17.65■□□□□ 0.42
SDC4-201ENST00000372733 RASGRF2O14827 1237 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 GSTA1P08263 222 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 CLTAP09496 248 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 SLC8A1P32418 973 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 KCNJ1P48048 391 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 BFSP1Q12934 665 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 LRRC14Q15048 493 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 LLGL1Q15334 1064 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 CNGA2Q16280 664 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 ZNF720Q7Z2F6 126 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 PNMA8AQ86V59 439 aaPredicted RBP17.65■□□□□ 0.42
SDC4-201ENST00000372733 SIAH1Q8IUQ4 282 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 CCDC17Q96LX7 622 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 WDR18Q9BV38 432 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.65■□□□□ 0.42
SDC4-201ENST00000372733 STK24Q9Y6E0 443 aa17.65■□□□□ 0.42
SDC4-201ENST00000372733 AFF2P51816 1311 aa17.64■□□□□ 0.42
SDC4-201ENST00000372733 EXOC3O60645 756 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 SLITRK3O94933 977 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 FOSP01100 380 aaPredicted RBP17.64■□□□□ 0.41
SDC4-201ENST00000372733 PYGMP11217 842 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 ALAS1P13196 640 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 DLG4P78352 724 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 ACCSLQ4AC99 568 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 SEL1L2Q5TEA6 688 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 APOBEC3HQ6NTF7 200 aaKnown RBP17.64■□□□□ 0.41
SDC4-201ENST00000372733 RPUSD2Q8IZ73 545 aaKnown RBP17.64■□□□□ 0.41
SDC4-201ENST00000372733 LMO3Q8TAP4 145 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 CCDC134Q9H6E4 229 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 UBE2TQ9NPD8 197 aaPredicted RBP17.64■□□□□ 0.41
SDC4-201ENST00000372733 CNOT7Q9UIV1 285 aaKnown RBP17.64■□□□□ 0.41
SDC4-201ENST00000372733 PCDHAC2Q9Y5I4 1007 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 IGLV3-22A0A075B6J6 115 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 HSPA6P17066 643 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 SCP2P22307 547 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 HADHBP55084 474 aaKnown RBP17.64■□□□□ 0.41
SDC4-201ENST00000372733 ICA1Q05084 483 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 PPP2R5AQ15172 486 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 CLUL1Q15846 466 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 ODR4Q5SWX8 454 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 CCDC105Q8IYK2 499 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 BTBD6Q96KE9 485 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 DDX23Q9BUQ8 820 aaKnown RBP17.64■□□□□ 0.41
SDC4-201ENST00000372733 VEZTQ9HBM0 779 aa17.64■□□□□ 0.41
SDC4-201ENST00000372733 WRAP73Q9P2S5 460 aaPredicted RBP17.64■□□□□ 0.41
SDC4-201ENST00000372733 TISP43B9A030 160 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 PODXLO00592 558 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 BBOX1O75936 387 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 UBOX5O94941 541 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 PEX5P50542 639 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 LONRF1Q17RB8 773 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 DOK7Q18PE1 504 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 NBPF9Q3BBW0 867 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 CERKLQ49MI3 558 aaPredicted RBP17.63■□□□□ 0.41
SDC4-201ENST00000372733 SYDE2Q5VT97 1194 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 LRCH2Q5VUJ6 765 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 KAT5Q92993 513 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 MKL1Q969V6 931 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 POP1Q99575 1024 aaKnown RBP17.63■□□□□ 0.41
SDC4-201ENST00000372733 NSRP1Q9H0G5 558 aaKnown RBP17.63■□□□□ 0.41
SDC4-201ENST00000372733 ATP6V0A4Q9HBG4 840 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 NYAP2Q9P242 653 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 PARP2Q9UGN5 583 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 SUFUQ9UMX1 484 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 PFASO15067 1338 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 F5H6K3 240 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 GDF11O95390 407 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 NDUFB10O96000 172 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 SERPINB2P05120 415 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 STAMBPL1Q96FJ0 436 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 TMEM109Q9BVC6 243 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 DONSONQ9NYP3 566 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 EMSYQ7Z589 1322 aa17.63■□□□□ 0.41
SDC4-201ENST00000372733 DDTLA6NHG4 134 aaPredicted RBP17.62■□□□□ 0.41
SDC4-201ENST00000372733 RPSAP08865 295 aaKnown RBP17.62■□□□□ 0.41
SDC4-201ENST00000372733 CREB1P16220 341 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms