RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ZSCAN20P17040 1043 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-203ENST00000372407 ITPK1Q13572 414 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 SLC12A1Q13621 1099 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 CIAPIN1Q6FI81 312 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 PDXDC1Q6P996 788 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 CXorf38Q8TB03 319 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.19□□□□□ -0.468e-7■■■■■ 32.1
PTPRF-203ENST00000372407 CCDC124Q96CT7 223 aaKnown RBP12.19□□□□□ -0.46
PTPRF-203ENST00000372407 CYTH2Q99418 400 aa12.19□□□□□ -0.46
PTPRF-203ENST00000372407 MRPL46Q9H2W6 279 aaKnown RBP12.19□□□□□ -0.46
PTPRF-203ENST00000372407 SPAG7O75391 227 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 PMLP29590 882 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 PDIA5Q14554 519 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 ZNF746Q6NUN9 644 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 ENOSF1Q7L5Y1 443 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 PIP4K2CQ8TBX8 421 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 FAM213AQ9BRX8 229 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 NUP85Q9BW27 656 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 WNT8AQ9H1J5 351 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 USP42Q9H9J4 1324 aaKnown RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 KRT7P08729 469 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 TBXAS1P24557 533 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 CCZ1BP86790 482 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 CCZ1P86791 482 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 CATSPER4Q7RTX7 472 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 NLRP14Q86W24 1093 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 ST13P4Q8IZP2 240 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 STAG2Q8N3U4 1231 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 CHMP6Q96FZ7 201 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 USP32Q8NFA0 1604 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 COL5A2P05997 1499 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 MROH7-TTC4A0A0A0MT08 1334 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 CNTNAP4Q9C0A0 1308 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 FCER1AP12319 257 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 KRT10P13645 584 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 EEF1B2P24534 225 aaKnown RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 SFNP31947 248 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 FOXO4P98177 505 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 ANKRD40Q6AI12 368 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 CCDC137Q6PK04 289 aaKnown RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 PASD1Q8IV76 773 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 RHOT1Q8IXI2 618 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 DACT3Q96B18 629 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 CHP1Q99653 195 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 INTS2Q9H0H0 1204 aaKnown RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 CYP26B1Q9NR63 512 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 FBXO40Q9UH90 709 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 FNDC3AQ9Y2H6 1198 aaKnown RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 NOC2LQ9Y3T9 749 aaKnown RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 KIF1AQ12756 1690 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 HAUS5O94927 633 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 MARK3P27448 753 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 DHX34Q14147 1143 aaKnown RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 ZNF699Q32M78 642 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 FSCBQ5H9T9 825 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 FRMD5Q7Z6J6 570 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 HIPK4Q8NE63 616 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 TDRD3Q9H7E2 651 aaKnown RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 KLHL8Q9P2G9 620 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 HEY1Q9Y5J3 304 aa12.18□□□□□ -0.46
PTPRF-203ENST00000372407 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.18□□□□□ -0.46
PTPRF-203ENST00000372407 SSU72P8A0A1W2PR75 194 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 NBPF26B4DH59 902 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 SLC4A1P02730 911 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 STXBP2Q15833 593 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 TRIM72Q6ZMU5 477 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 ILDR1Q86SU0 546 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-203ENST00000372407 NBPF15Q8N660 670 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 TRIML2Q8N7C3 387 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 NSUN6Q8TEA1 469 aaKnown RBP12.17□□□□□ -0.46
PTPRF-203ENST00000372407 MLXIPLQ9NP71 852 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 TOPORSQ9NS56 1045 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-203ENST00000372407 TUBE1Q9UJT0 475 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 FBXL5Q9UKA1 691 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 GRIN3BO60391 1043 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 GUCY1A2P33402 732 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 PDCD2Q16342 344 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-203ENST00000372407 ADSSL1Q8N142 457 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 RYBPQ8N488 228 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-203ENST00000372407 PSPC1Q8WXF1 523 aaKnown RBP12.17□□□□□ -0.46
PTPRF-203ENST00000372407 NRBF2Q96F24 287 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 AMACRQ9UHK6 382 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 ZFP69BQ9UJL9 534 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 ATP8B3O60423 1300 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 KPNA7A9QM74 516 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 PDXKO00764 312 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 PPP1R37O75864 691 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 GGPS1O95749 300 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 TRIM49P0CI25 452 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 TRIM49CP0CI26 452 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 EPHB1P54762 984 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 ATG9AQ7Z3C6 839 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 SRBD1Q8N5C6 995 aaKnown RBP12.17□□□□□ -0.46
PTPRF-203ENST00000372407 PPM1NQ8N819 430 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 FAM84BQ96KN1 310 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-203ENST00000372407 ETNK1Q9HBU6 452 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 RNF181Q9P0P0 153 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 UBE4BO95155 1302 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 MYO5BQ9ULV0 1848 aa12.17□□□□□ -0.46
PTPRF-203ENST00000372407 GSTA4O15217 222 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms