RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 TRIP13Q15645 432 aaPredicted RBP12.52□□□□□ -0.41
COL9A1-202ENST00000357250 OR6B3Q8NGW1 331 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 COG1Q8WTW3 980 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 SKA2Q8WVK7 121 aaPredicted RBP12.52□□□□□ -0.41
COL9A1-202ENST00000357250 SPDL1Q96EA4 605 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 C7orf25Q9BPX7 421 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 TRAIPQ9BWF2 469 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 MRPL4Q9BYD3 311 aaKnown RBP12.52□□□□□ -0.41
COL9A1-202ENST00000357250 TRIM9Q9C026 710 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 SLC8A2Q9UPR5 921 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 MORC2Q9Y6X9 1032 aaPredicted RBP12.52□□□□□ -0.41
COL9A1-202ENST00000357250 PRR29P0C7W0 189 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 SCP2P22307 547 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 SDC4P31431 198 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 GFPT1Q06210 699 aaPredicted RBP12.52□□□□□ -0.41
COL9A1-202ENST00000357250 VPS72Q15906 364 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 ELMSAN1Q6PJG2 1045 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 APOBEC3FQ8IUX4 373 aaKnown RBP12.52□□□□□ -0.41
COL9A1-202ENST00000357250 THEM5Q8N1Q8 247 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 NRBF2Q96F24 287 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 PHF20Q9BVI0 1012 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 RNF146Q9NTX7 359 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 MST1RQ04912 1400 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 PP2D1A8MPX8 630 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 RHOBTB3O94955 611 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 GPC3P51654 580 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 ANTXR2P58335 489 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 MMS22LQ6ZRQ5 1243 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 ADGRF4Q8IZF3 695 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 FBXL13Q8NEE6 735 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 CFAP36Q96G28 342 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.52□□□□□ -0.41
COL9A1-202ENST00000357250 PIM2Q9P1W9 311 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 ITSN1Q15811 1721 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 GNGT2O14610 69 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 TMPRSS15P98073 1019 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 KIAA1841Q6NSI8 718 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 CDKL3Q8IVW4 592 aaPredicted RBP12.51□□□□□ -0.41
COL9A1-202ENST00000357250 THNSL1Q8IYQ7 743 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 ATP11CQ8NB49 1132 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 ATP6V1G3Q96LB4 118 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 FOXP3Q9BZS1 431 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 TSPYL2Q9H2G4 693 aaPredicted RBP12.51□□□□□ -0.41
COL9A1-202ENST00000357250 ZNF302Q9NR11 478 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 APOBEC2Q9Y235 224 aaKnown RBP12.51□□□□□ -0.41
COL9A1-202ENST00000357250 SPATA31A5Q5VU36 1347 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 SPATA31A7Q8IWB4 1347 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 CFAP73A6NFT4 308 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 SFI1A8K8P3 1242 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 CLGNO14967 610 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 HSPA4LO95757 839 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 PMLP29590 882 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 SNRPFP62306 86 aaKnown RBP12.51□□□□□ -0.41
COL9A1-202ENST00000357250 PDCD2Q16342 344 aaPredicted RBP12.51□□□□□ -0.41
COL9A1-202ENST00000357250 EDRF1Q3B7T1 1238 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 TMEM270Q6UE05 265 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 EPM2AIP1Q7L775 607 aaPredicted RBP12.51□□□□□ -0.41
COL9A1-202ENST00000357250 METTL16Q86W50 562 aaKnown RBP12.51□□□□□ -0.41
COL9A1-202ENST00000357250 KIRREL3Q8IZU9 778 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 ADSSL1Q8N142 457 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 ELAC2Q9BQ52 826 aaKnown RBP12.51□□□□□ -0.41
COL9A1-202ENST00000357250 NUP85Q9BW27 656 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 STOML1Q9UBI4 398 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 TRIM33Q9UPN9 1127 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 WTIPA6NIX2 430 aaPredicted RBP12.51□□□□□ -0.41
COL9A1-202ENST00000357250 HUS1O60921 280 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 SMIM24O75264 130 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 ZNF568Q3ZCX4 644 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 AP1ARQ63HQ0 302 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 KRT80Q6KB66 452 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 SCARA5Q6ZMJ2 495 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 C4orf50Q6ZRC1 276 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 GPD1LQ8N335 351 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 SNF8Q96H20 258 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 ZWILCHQ9H900 591 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 NDE1Q9NXR1 346 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 UVRAGQ9P2Y5 699 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 ZHX2Q9Y6X8 837 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 JCADQ9P266 1359 aa12.51□□□□□ -0.41
COL9A1-202ENST00000357250 TEX33O43247 280 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 HNRNPCL1O60812 293 aaKnown RBP12.5□□□□□ -0.41
COL9A1-202ENST00000357250 FTLP02792 175 aaPredicted RBP12.5□□□□□ -0.41
COL9A1-202ENST00000357250 SRGNP10124 158 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 PDCLQ13371 301 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 DRP2Q13474 957 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 ITPRIPL1Q6GPH6 555 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 GDAP1Q8TB36 358 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 TMEM260Q9NX78 707 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 SUN2Q9UH99 717 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 USP32Q8NFA0 1604 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 AP3B1O00203 1094 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 ECE2O60344 883 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 GGCXP38435 758 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 HNRNPH2P55795 449 aaKnown RBP12.5□□□□□ -0.41
COL9A1-202ENST00000357250 STILQ15468 1287 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 SLC10A4Q96EP9 437 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 EIF2AK1Q9BQI3 630 aaKnown RBP12.5□□□□□ -0.41
COL9A1-202ENST00000357250 LXNQ9BS40 222 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 ACAD9Q9H845 621 aa12.5□□□□□ -0.41
COL9A1-202ENST00000357250 PCDHA10Q9Y5I2 948 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms