RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ARHGAP30Q7Z6I6 1101 aaPredicted RBP2.64□□□□□ -1.99
VPS54-202ENST00000354504 LRRC8AQ8IWT6 810 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 KIAA0895Q8NCT3 520 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 BAHD1Q8TBE0 780 aaPredicted RBP2.64□□□□□ -1.99
VPS54-202ENST00000354504 PPP1R13LQ8WUF5 828 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 KCNN1Q92952 543 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 ZNF830Q96NB3 372 aaPredicted RBP2.64□□□□□ -1.99
VPS54-202ENST00000354504 PSMD1Q99460 953 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 TRIM55Q9BYV6 548 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 KRT23Q9C075 422 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 VPS54Q9P1Q0 977 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 FRMD4AQ9P2Q2 1039 aaPredicted RBP2.64□□□□□ -1.99
VPS54-202ENST00000354504 CTNNA3Q9UI47 895 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 VAV3Q9UKW4 847 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 JAG2Q9Y219 1238 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 ZNF652Q9Y2D9 606 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 PTCH2Q9Y6C5 1203 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 VWA8A3KMH1 1905 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 SCN8AQ9UQD0 1980 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 BLACEA4D250 179 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 MEIS3P2A8K0S8 358 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 ZBTB43O43298 467 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 DEXIO95424 95 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 IGHMBP2P38935 993 aaKnown RBP2.64□□□□□ -1.99
VPS54-202ENST00000354504 BTDP43251 543 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 ZNF280AP59817 542 aaPredicted RBP2.64□□□□□ -1.99
VPS54-202ENST00000354504 KRT85P78386 507 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 KIAA2012Q0VF49 1180 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 MAP3K12Q12852 859 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 PRSS53Q2L4Q9 553 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 KRTAP19-4Q3LI73 84 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 ZSCAN30Q86W11 494 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 NBPF5PQ86XG9 351 aaPredicted RBP2.64□□□□□ -1.99
VPS54-202ENST00000354504 CKAP2LQ8IYA6 745 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 CNBD1Q8NA66 436 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 PAGE5Q96GU1 130 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 ALG1Q9BT22 464 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 GPR88Q9GZN0 384 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 MRPL18Q9H0U6 180 aaKnown RBP2.64□□□□□ -1.99
VPS54-202ENST00000354504 R3HDMLQ9H3Y0 253 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 L2HGDHQ9H9P8 463 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 GOLGA2P5Q9HBQ8 144 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 DDX19AQ9NUU7 478 aaKnown RBP2.64□□□□□ -1.99
VPS54-202ENST00000354504 ZNF446Q9NWS9 450 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 ACTR10Q9NZ32 417 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 ORC3Q9UBD5 711 aaPredicted RBP2.64□□□□□ -1.99
VPS54-202ENST00000354504 ZMYM5Q9UJ78 669 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 TELO2Q9Y4R8 837 aa2.64□□□□□ -1.99
VPS54-202ENST00000354504 ASTN2O75129 1339 aaPredicted RBP2.63□□□□□ -1.99
VPS54-202ENST00000354504 CFAP54Q96N23 3096 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 VWA3AA6NCI4 1184 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 FAM177BA6PVY3 158 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 PP2D1A8MPX8 630 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 ZNF263O14978 683 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 SPTLC2O15270 562 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 CUTAO60888 179 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 LILRB5O75023 590 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 EPHX1P07099 455 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 NPR1P16066 1061 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 PRPHP41219 470 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 ARHGAP25P42331 645 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 C19orf57Q0VDD7 668 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 PPP2R5BQ15173 497 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 POU4F3Q15319 338 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 SLC10A6Q3KNW5 377 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 L1TD1Q5T7N2 865 aaKnown RBP2.63□□□□□ -1.99
VPS54-202ENST00000354504 FOXR2Q6PJQ5 311 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 MFSD6Q6ZSS7 791 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 DIS3L2Q8IYB7 885 aaKnown RBP2.63□□□□□ -1.99
VPS54-202ENST00000354504 JMYQ8N9B5 988 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 GMCL1P1Q8NEA9 526 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 FGD4Q96M96 766 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 FANCD2OSQ96PS1 177 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 BRINP2Q9C0B6 783 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 DDX24Q9GZR7 859 aaKnown RBP eCLIP2.63□□□□□ -1.99
VPS54-202ENST00000354504 COA1Q9GZY4 146 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 TTC12Q9H892 705 aaPredicted RBP2.63□□□□□ -1.99
VPS54-202ENST00000354504 ARHGEF4Q9NR80 690 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 ADD3Q9UEY8 706 aaKnown RBP2.63□□□□□ -1.99
VPS54-202ENST00000354504 ZNF112Q9UJU3 913 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 SNCAIPQ9Y6H5 919 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 PDPK1O15530 556 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 DHX15O43143 795 aaKnown RBP2.63□□□□□ -1.99
VPS54-202ENST00000354504 NOL4O94818 638 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 LCA5LO95447 670 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 SCG2P13521 617 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 NME1P15531 152 aaKnown RBP2.63□□□□□ -1.99
VPS54-202ENST00000354504 PDCP20941 246 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 CHRNA5P30532 468 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 CDKN1CP49918 316 aaPredicted RBP2.63□□□□□ -1.99
VPS54-202ENST00000354504 ZNF543Q08ER8 600 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 MBTPS1Q14703 1052 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 TMEM67Q5HYA8 995 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 SPECC1Q5M775 1068 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 HP1BP3Q5SSJ5 553 aaPredicted RBP2.63□□□□□ -1.99
VPS54-202ENST00000354504 TTI2Q6NXR4 508 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 LRRC55Q6ZSA7 311 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 MICU3Q86XE3 530 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 TMEM40Q8WWA1 233 aa2.63□□□□□ -1.99
VPS54-202ENST00000354504 MRPS27Q92552 414 aaKnown RBP2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms