RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SOX5P35711 763 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 TCF7P36402 384 aaPredicted RBP15.93■□□□□ 0.14
COL17A1-201ENST00000353479 DHX9Q08211 1270 aaKnown RBP15.93■□□□□ 0.14
COL17A1-201ENST00000353479 ADCY1Q08828 1119 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 ZNF710Q8N1W2 664 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 PDE11AQ9HCR9 933 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 LRRC4BQ9NT99 713 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 TJP3O95049 919 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 PGK2P07205 417 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 CDC42EP1Q00587 391 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 SEPT6Q14141 434 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 DGKDQ16760 1214 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 GNASQ5JWF2 1037 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 CCHCR1Q8TD31 782 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 DPF2Q92785 391 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 GMCL1Q96IK5 515 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 PCSK1NQ9UHG2 260 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 AGAP1Q9UPQ3 857 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 CAMTA1Q9Y6Y1 1673 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 A0A1W2PQC6 194 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 WTIPA6NIX2 430 aaPredicted RBP15.93■□□□□ 0.14
COL17A1-201ENST00000353479 WNT10BO00744 389 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 ZRANB2O95218 330 aaKnown RBP eCLIP15.93■□□□□ 0.14
COL17A1-201ENST00000353479 SDC4P31431 198 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 MRPS25P82663 173 aaKnown RBP15.93■□□□□ 0.14
COL17A1-201ENST00000353479 KIAA0391O15091 583 aaKnown RBP15.93■□□□□ 0.14
COL17A1-201ENST00000353479 GSTA1P08263 222 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 GSTA2P09210 222 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 SHMT1P34896 483 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 TPD52P55327 224 aaPredicted RBP15.93■□□□□ 0.14
COL17A1-201ENST00000353479 DACT2Q5SW24 774 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 TMEM106CQ9BVX2 250 aa15.93■□□□□ 0.14
COL17A1-201ENST00000353479 GOLGA8CPA6NN73 597 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 CYP26A1O43174 497 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 SRGAP2O75044 1071 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 CPB1P15086 417 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 TSTA3Q13630 321 aaPredicted RBP15.92■□□□□ 0.14
COL17A1-201ENST00000353479 SNRNP35Q16560 246 aaKnown RBP15.92■□□□□ 0.14
COL17A1-201ENST00000353479 IER5Q5VY09 327 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 PDXDC1Q6P996 788 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 FAM83AQ86UY5 434 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 AFG1LQ8WV93 481 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 PPP1R9AQ9ULJ8 1098 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 CYP2C9P11712 490 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 HOXA10P31260 410 aaPredicted RBP15.92■□□□□ 0.14
COL17A1-201ENST00000353479 NXNQ6DKJ4 435 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 ELMOD1Q8N336 334 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 TTC39CQ8N584 583 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 AK9Q5TCS8 1911 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 EPHB1P54762 984 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 ACTR2P61160 394 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 RPS6KA2Q15349 733 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 BBS9Q3SYG4 887 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 ARHGEF2Q92974 986 aaKnown RBP15.92■□□□□ 0.14
COL17A1-201ENST00000353479 RBM41Q96IZ5 413 aaKnown RBP15.92■□□□□ 0.14
COL17A1-201ENST00000353479 PPP2R3BQ9Y5P8 575 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 ADGRB2O60241 1585 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 MIF4GDA9UHW6 222 aaKnown RBP15.92■□□□□ 0.14
COL17A1-201ENST00000353479 LAMC2Q13753 1193 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 OPTNQ96CV9 577 aa15.92■□□□□ 0.14
COL17A1-201ENST00000353479 DDX4Q9NQI0 724 aaKnown RBP15.92■□□□□ 0.14
COL17A1-201ENST00000353479 HBP1O60381 514 aa15.91■□□□□ 0.14
COL17A1-201ENST00000353479 FCGRTP55899 365 aa15.91■□□□□ 0.14
COL17A1-201ENST00000353479 MAP1SQ66K74 1059 aaPredicted RBP15.91■□□□□ 0.14
COL17A1-201ENST00000353479 BZW1Q7L1Q6 419 aaKnown RBP15.91■□□□□ 0.14
COL17A1-201ENST00000353479 DNAJC17Q9NVM6 304 aaKnown RBP15.91■□□□□ 0.14
COL17A1-201ENST00000353479 LIMA1Q9UHB6 759 aaKnown RBP15.91■□□□□ 0.14
COL17A1-201ENST00000353479 APBA1Q02410 837 aa15.91■□□□□ 0.14
COL17A1-201ENST00000353479 RNF25Q96BH1 459 aaPredicted RBP15.91■□□□□ 0.14
COL17A1-201ENST00000353479 CFAP36Q96G28 342 aa15.91■□□□□ 0.14
COL17A1-201ENST00000353479 HEY1Q9Y5J3 304 aa15.91■□□□□ 0.14
COL17A1-201ENST00000353479 MSH2P43246 934 aa15.91■□□□□ 0.14
COL17A1-201ENST00000353479 CREB3O43889 395 aa15.91■□□□□ 0.14
COL17A1-201ENST00000353479 THOC5Q13769 683 aaKnown RBP15.91■□□□□ 0.14
COL17A1-201ENST00000353479 FAM102AQ5T9C2 384 aaPredicted RBP15.91■□□□□ 0.14
COL17A1-201ENST00000353479 RPS6KA5O75582 802 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 TMED2Q15363 201 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 MUM1L1Q5H9M0 696 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 POLR3CQ9BUI4 534 aaPredicted RBP15.9■□□□□ 0.14
COL17A1-201ENST00000353479 RRAGCQ9HB90 399 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 STAP1Q9ULZ2 295 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 SNX9Q9Y5X1 595 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 DISP2A7MBM2 1401 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 TMEM132DQ14C87 1099 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 NCAPGQ9BPX3 1015 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 CAPN11Q9UMQ6 739 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 SYNGAP1Q96PV0 1343 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 ASAP2O43150 1006 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 VEGFAP15692 232 aaPredicted RBP15.9■□□□□ 0.14
COL17A1-201ENST00000353479 SLCO1A2P46721 670 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 CPT1AP50416 773 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 NME3Q13232 169 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 APOBEC3HQ6NTF7 200 aaKnown RBP15.9■□□□□ 0.14
COL17A1-201ENST00000353479 MED4Q9NPJ6 270 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 FMO5P49326 533 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 ZNF211Q13398 564 aaPredicted RBP15.9■□□□□ 0.14
COL17A1-201ENST00000353479 ATF7IP2Q5U623 682 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 PLEKHH3Q7Z736 793 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 VGLL2Q8N8G2 317 aa15.9■□□□□ 0.14
COL17A1-201ENST00000353479 ANKEF1Q9NU02 776 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms