RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ZBED4O75132 1171 aa23.57■■□□□ 1.36
SHMT1-202ENST00000352886 EIF1ADQ8N9N8 165 aaKnown RBP23.57■■□□□ 1.36
SHMT1-202ENST00000352886 PARP14Q460N5 1801 aa23.56■■□□□ 1.36
SHMT1-202ENST00000352886 FGGP02679 453 aa23.56■■□□□ 1.36
SHMT1-202ENST00000352886 MXI1P50539 228 aa23.56■■□□□ 1.36
SHMT1-202ENST00000352886 KCTD19Q17RG1 926 aaPredicted RBP23.56■■□□□ 1.36
SHMT1-202ENST00000352886 DNAJC21Q5F1R6 531 aaKnown RBP23.56■■□□□ 1.36
SHMT1-202ENST00000352886 DCAF12L1Q5VU92 463 aa23.56■■□□□ 1.36
SHMT1-202ENST00000352886 IWS1Q96ST2 819 aa23.56■■□□□ 1.36
SHMT1-202ENST00000352886 TMEM117Q9H0C3 514 aa23.56■■□□□ 1.36
SHMT1-202ENST00000352886 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.56■■□□□ 1.36
SHMT1-202ENST00000352886 ADRB2P07550 413 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 SFNP31947 248 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 KRT76Q01546 638 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 KCTD16Q68DU8 428 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 WNK4Q96J92 1243 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 CAPS2Q9BXY5 557 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 CCDC169A6NNP5 214 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 MAPK13O15264 365 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 HSPA9P38646 679 aaKnown RBP23.55■■□□□ 1.36
SHMT1-202ENST00000352886 USP8P40818 1118 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 SNRPFP62306 86 aaKnown RBP23.55■■□□□ 1.36
SHMT1-202ENST00000352886 AEBP2Q6ZN18 517 aaPredicted RBP23.55■■□□□ 1.36
SHMT1-202ENST00000352886 KAT5Q92993 513 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 VTI1AQ96AJ9 217 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 KIFC3Q9BVG8 833 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 SLITRK6Q9H5Y7 841 aa23.55■■□□□ 1.36
SHMT1-202ENST00000352886 KIAA1217Q5T5P2 1943 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 IRAK1P51617 712 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 CBWD2Q8IUF1 395 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 RPUSD2Q8IZ73 545 aaKnown RBP23.54■■□□□ 1.36
SHMT1-202ENST00000352886 SH2D3CQ8N5H7 860 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 ATG4CQ96DT6 458 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 ANKEF1Q9NU02 776 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 PIM2Q9P1W9 311 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 TTC7AQ9ULT0 858 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-202ENST00000352886 RIPK3Q9Y572 518 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 BHMG1C9JSJ3 638 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-202ENST00000352886 VWA5AO00534 786 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 FTLP02792 175 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-202ENST00000352886 PRPF4BQ13523 1007 aaKnown RBP23.54■■□□□ 1.36
SHMT1-202ENST00000352886 MAATS1Q7Z4T9 603 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 RHOT2Q8IXI1 618 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 CCDC26Q8TAB7 109 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 TAOK3Q9H2K8 898 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 GINM1Q9NU53 330 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 TBX20Q9UMR3 447 aa23.54■■□□□ 1.36
SHMT1-202ENST00000352886 COL11A1P12107 1806 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-202ENST00000352886 ANKRD63C9JTQ0 380 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 TTI1O43156 1089 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 PPFIA4O75335 1185 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 ADSSP30520 456 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 ZNF280AP59817 542 aaPredicted RBP23.53■■□□□ 1.36
SHMT1-202ENST00000352886 BAATQ14032 418 aaPredicted RBP23.53■■□□□ 1.36
SHMT1-202ENST00000352886 SNRNP35Q16560 246 aaKnown RBP23.53■■□□□ 1.36
SHMT1-202ENST00000352886 NAA35Q5VZE5 725 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 ZNF746Q6NUN9 644 aaPredicted RBP23.53■■□□□ 1.36
SHMT1-202ENST00000352886 ANO5Q75V66 913 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 CD302Q8IX05 232 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 TMEM161BQ8NDZ6 487 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 SAAL1Q96ER3 474 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 RNPC3Q96LT9 517 aaKnown RBP23.53■■□□□ 1.36
SHMT1-202ENST00000352886 CARD9Q9H257 536 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 NEUROG2Q9H2A3 272 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 DIS3Q9Y2L1 958 aaKnown RBP23.53■■□□□ 1.36
SHMT1-202ENST00000352886 MAP2K1Q02750 393 aaPredicted RBP23.53■■□□□ 1.36
SHMT1-202ENST00000352886 SLC17A8Q8NDX2 589 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 CELF4Q9BZC1 486 aaKnown RBP23.53■■□□□ 1.36
SHMT1-202ENST00000352886 RNF146Q9NTX7 359 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 RSPH14Q9UHP6 348 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 EXOC7Q9UPT5 735 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 NR2E1Q9Y466 385 aa23.53■■□□□ 1.36
SHMT1-202ENST00000352886 TULP2O00295 520 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 NPTX2P47972 431 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 SMTNP53814 917 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 DMP1Q13316 513 aaPredicted RBP23.52■■□□□ 1.36
SHMT1-202ENST00000352886 CCDC127Q96BQ5 260 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 CTTNBP2NLQ9P2B4 639 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 PNMA2Q9UL42 364 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 PLAAQ9Y263 795 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 DAPK3O43293 454 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 SGPL1O95470 568 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 GNGT1P63211 74 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 SAMD7Q7Z3H4 446 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 PPM1KQ8N3J5 372 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 MOV10L1Q9BXT6 1211 aaKnown RBP23.52■■□□□ 1.36
SHMT1-202ENST00000352886 LCMT1Q9UIC8 334 aa23.52■■□□□ 1.36
SHMT1-202ENST00000352886 VGLL3A8MV65 326 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 PMM2O15305 246 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 CNGA1P29973 690 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 HADHBP55084 474 aaKnown RBP23.51■■□□□ 1.35
SHMT1-202ENST00000352886 TTC19Q6DKK2 380 aaPredicted RBP23.51■■□□□ 1.35
SHMT1-202ENST00000352886 SRLQ86TD4 932 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 NLRX1Q86UT6 975 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 MAP4K3Q8IVH8 894 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 EPS8L1Q8TE68 723 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 PCDHA10Q9Y5I2 948 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 ALG6Q9Y672 507 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 DOCK1Q14185 1865 aa23.51■■□□□ 1.35
SHMT1-202ENST00000352886 DOCK5Q9H7D0 1870 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms