RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ATP8B4Q8TF62 1192 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 TCP11Q8WWU5 503 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 LPAR1Q92633 364 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 SELENOSQ9BQE4 189 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 ZDHHC18Q9NUE0 388 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 TMEM260Q9NX78 707 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 MTRF1LQ9UGC7 380 aaKnown RBP17.12■□□□□ 0.33
HMGA1-202ENST00000347617 ATP8A1Q9Y2Q0 1164 aa17.12■□□□□ 0.33
HMGA1-202ENST00000347617 ZNF541Q9H0D2 1346 aa17.11■□□□□ 0.33
HMGA1-202ENST00000347617 PIK3CDO00329 1044 aa17.11■□□□□ 0.33
HMGA1-202ENST00000347617 EDIL3O43854 480 aa17.11■□□□□ 0.33
HMGA1-202ENST00000347617 DR1Q01658 176 aa17.11■□□□□ 0.33
HMGA1-202ENST00000347617 ARID5AQ03989 594 aa17.11■□□□□ 0.33
HMGA1-202ENST00000347617 TBC1D10BQ4KMP7 808 aaPredicted RBP17.11■□□□□ 0.33
HMGA1-202ENST00000347617 FAM212AQ96EL1 285 aa17.11■□□□□ 0.33
HMGA1-202ENST00000347617 STAMBPL1Q96FJ0 436 aa17.11■□□□□ 0.33
HMGA1-202ENST00000347617 KIAA1683Q9H0B3 1180 aa17.11■□□□□ 0.33
HMGA1-202ENST00000347617 RANBP17Q9H2T7 1088 aaKnown RBP17.11■□□□□ 0.33
HMGA1-202ENST00000347617 METTL14Q9HCE5 456 aaKnown RBP17.11■□□□□ 0.33
HMGA1-202ENST00000347617 CORO1CQ9ULV4 474 aaPredicted RBP17.11■□□□□ 0.33
HMGA1-202ENST00000347617 PITPNM2Q9BZ72 1349 aa17.11■□□□□ 0.33
HMGA1-202ENST00000347617 GTPBP10A4D1E9 387 aaKnown RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 DCDC2CA8MYV0 355 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 PODXLO00592 558 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 MEIS2O14770 477 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 SUN1O94901 812 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 GGPS1O95749 300 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 OAS1P00973 400 aaKnown RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 CLTAP09496 248 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 UCHL3P15374 230 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 SKIV2L2P42285 1042 aaKnown RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 MKRN3Q13064 507 aaKnown RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 IKQ13123 557 aaPredicted RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 MKRN4PQ13434 485 aaPredicted RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 ADAM9Q13443 819 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 LRRC41Q15345 812 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 GALNTL6Q49A17 601 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 MFSD5Q6N075 450 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 DAAM2Q86T65 1068 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 TEX9Q8N6V9 391 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 MBOAT7Q96N66 472 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 DPH5Q9H2P9 285 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 KCTD10Q9H3F6 313 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 SPATS2LQ9NUQ6 558 aaKnown RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 PPP1R12BO60237 982 aaPredicted RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 RPSAP08865 295 aaKnown RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 TMEM253P0C7T8 217 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 ATP5DP30049 168 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 LACTBP83111 547 aaPredicted RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 EXOC3L4Q17RC7 722 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 TNFAIP8L3Q5GJ75 292 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 KIAA1755Q5JYT7 1200 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 BZW1Q7L1Q6 419 aaKnown RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 PNMA8AQ86V59 439 aaPredicted RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 MDM1Q8TC05 714 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 RFFLQ8WZ73 363 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 TBC1D31Q96DN5 1066 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 ZNF341Q9BYN7 854 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 ADAM7Q9H2U9 754 aa17.1■□□□□ 0.33
HMGA1-202ENST00000347617 USP15Q9Y4E8 981 aaPredicted RBP17.1■□□□□ 0.33
HMGA1-202ENST00000347617 ABLIM1O14639 778 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 SLC16A3O15427 465 aaKnown RBP17.09■□□□□ 0.33
HMGA1-202ENST00000347617 SNX3O60493 162 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 ITGA4P13612 1032 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 NCALDP61601 193 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 ACCSLQ4AC99 568 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 CCDC38Q502W7 563 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 CDCA2Q69YH5 1023 aaPredicted RBP17.09■□□□□ 0.33
HMGA1-202ENST00000347617 DPY19L2P1Q6NXN4 242 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 TBC1D1Q86TI0 1168 aaPredicted RBP17.09■□□□□ 0.33
HMGA1-202ENST00000347617 CRYGNQ8WXF5 182 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 SH3GL3Q99963 347 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 ELAC2Q9BQ52 826 aaKnown RBP17.09■□□□□ 0.33
HMGA1-202ENST00000347617 WDR18Q9BV38 432 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 FHDC1Q9C0D6 1143 aaPredicted RBP17.09■□□□□ 0.33
HMGA1-202ENST00000347617 EPB41L4BQ9H329 900 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 EMILIN3Q9NT22 766 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 ARMCX3Q9UH62 379 aaPredicted RBP17.09■□□□□ 0.33
HMGA1-202ENST00000347617 TRAF3IP3Q9Y228 551 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 PCDHA2Q9Y5H9 948 aa17.09■□□□□ 0.33
HMGA1-202ENST00000347617 E7ENQ6 273 aa17.08■□□□□ 0.33
HMGA1-202ENST00000347617 WDR46O15213 610 aaKnown RBP17.08■□□□□ 0.33
HMGA1-202ENST00000347617 FGGP02679 453 aa17.08■□□□□ 0.33
HMGA1-202ENST00000347617 VIMP08670 466 aaKnown RBP17.08■□□□□ 0.33
HMGA1-202ENST00000347617 CHRNA3P32297 505 aa17.08■□□□□ 0.33
HMGA1-202ENST00000347617 JAM2P57087 298 aa17.08■□□□□ 0.33
HMGA1-202ENST00000347617 CMPK2Q5EBM0 449 aa17.08■□□□□ 0.33
HMGA1-202ENST00000347617 GPIHBP1Q8IV16 184 aa17.08■□□□□ 0.33
HMGA1-202ENST00000347617 SAAL1Q96ER3 474 aa17.08■□□□□ 0.33
HMGA1-202ENST00000347617 TRIM7Q9C029 511 aa17.08■□□□□ 0.33
HMGA1-202ENST00000347617 SBF1O95248 1867 aa17.08■□□□□ 0.32
HMGA1-202ENST00000347617 FRMD3A2A2Y4 597 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 BACH1O14867 736 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 CALUO43852 315 aaPredicted RBP17.07■□□□□ 0.32
HMGA1-202ENST00000347617 FDX1P10109 184 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 RARAP10276 462 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 GCKP35557 465 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 COPS2P61201 443 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 ATP11AP98196 1134 aa17.07■□□□□ 0.32
HMGA1-202ENST00000347617 BNIP1Q12981 228 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms