RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FZD1Q9UP38 647 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 KIAA0100Q14667 2235 aaKnown RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 LRRC72A6NJI9 287 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 SUN1O94901 812 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 CUL1Q13616 776 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 HERC6Q8IVU3 1022 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 DIS3L2Q8IYB7 885 aaKnown RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 PHACTR4Q8IZ21 702 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 FBXO32Q969P5 355 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 MYL10Q9BUA6 226 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 GULP1Q9UBP9 304 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 NOP58Q9Y2X3 529 aaKnown RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 PCDHB4Q9Y5E5 795 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 KCPQ6ZWJ8 1503 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 C1QTNF3-AMACRE9PGA6 284 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 GMNNO75496 209 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 AKT1P31749 480 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 ERVK-21P61565 698 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 PTK2Q05397 1052 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 RESTQ13127 1097 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 KIAA0319Q5VV43 1072 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 FAM46CQ5VWP2 391 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 TAOK1Q7L7X3 1001 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 DGLUCYQ7Z3D6 616 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 BAP1Q92560 729 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 BHMTQ93088 406 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 E2F7Q96AV8 911 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 PPP1R16AQ96I34 528 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 NDOR1Q9UHB4 597 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 USP20Q9Y2K6 914 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 ELP1O95163 1332 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 DIP2AQ14689 1571 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 LTBP4Q8N2S1 1624 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 CAPN8A6NHC0 703 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 H3BQ06 376 aaPredicted RBP9.03□□□□□ -0.96
HMGB1-203ENST00000341423 SNAP23O00161 211 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 KLHL41O60662 606 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 PEX3P56589 373 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 RPS6P62753 249 aaKnown RBP9.03□□□□□ -0.96
HMGB1-203ENST00000341423 BEND3Q5T5X7 828 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 BSPRYQ5W0U4 402 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 CACUL1Q86Y37 369 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 NELFCDQ8IXH7 590 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 GPATCH11Q8N954 259 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 GPRASP2Q96D09 838 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 NT5C1BQ96P26 610 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 MTMR9Q96QG7 549 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 BCAS3Q9H6U6 928 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 SAE1Q9UBE0 346 aaPredicted RBP9.03□□□□□ -0.96
HMGB1-203ENST00000341423 PRR12Q9ULL5 1215 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 UBQLN1Q9UMX0 589 aaKnown RBP9.03□□□□□ -0.96
HMGB1-203ENST00000341423 USTQ9Y2C2 406 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 A6NCN8 305 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 WTIPA6NIX2 430 aaPredicted RBP9.03□□□□□ -0.96
HMGB1-203ENST00000341423 SPOPO43791 374 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 CXCR2P25025 360 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 CDK17Q00537 523 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 ZNF235Q14590 738 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 CASC4Q6P4E1 433 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 ANKS3Q6ZW76 656 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 ADCK2Q7Z695 626 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 ZNF592Q92610 1267 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 ZNF653Q96CK0 615 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 TCEANC2Q96MN5 208 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 PDGFDQ9GZP0 370 aaPredicted RBP9.03□□□□□ -0.96
HMGB1-203ENST00000341423 SP110Q9HB58 689 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 UTP6Q9NYH9 597 aaKnown RBP9.03□□□□□ -0.96
HMGB1-203ENST00000341423 PREX1Q8TCU6 1659 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 NEMP2A6NFY4 417 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 AGRPO00253 132 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 ZNF286BP0CG31 522 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 HOXB8P17481 243 aaPredicted RBP9.03□□□□□ -0.96
HMGB1-203ENST00000341423 ERCC5P28715 1186 aaPredicted RBP9.03□□□□□ -0.96
HMGB1-203ENST00000341423 PDE1AP54750 535 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 PTPN14Q15678 1187 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 VWA3BQ502W6 1294 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 NOMO2Q5JPE7 1267 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 HABP4Q5JVS0 413 aaKnown RBP9.03□□□□□ -0.96
HMGB1-203ENST00000341423 VPS52Q8N1B4 723 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 BRI3BPQ8WY22 251 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 TSSK1BQ9BXA7 367 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 DCLK3Q9C098 648 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 OLFML3Q9NRN5 406 aa9.03□□□□□ -0.96
HMGB1-203ENST00000341423 ADGBQ8N7X0 1667 aa9.02□□□□□ -0.96
HMGB1-203ENST00000341423 NRCAMQ92823 1304 aa9.02□□□□□ -0.96
HMGB1-203ENST00000341423 NPTXRO95502 500 aa9.02□□□□□ -0.96
HMGB1-203ENST00000341423 MBD3O95983 291 aa9.02□□□□□ -0.96
HMGB1-203ENST00000341423 MYLK4Q86YV6 388 aaPredicted RBP9.02□□□□□ -0.96
HMGB1-203ENST00000341423 CCDC63Q8NA47 563 aa9.02□□□□□ -0.96
HMGB1-203ENST00000341423 CCDC3Q9BQI4 270 aa9.02□□□□□ -0.96
HMGB1-203ENST00000341423 KIFC3Q9BVG8 833 aa9.02□□□□□ -0.96
HMGB1-203ENST00000341423 MAD1L1Q9Y6D9 718 aa9.02□□□□□ -0.96
HMGB1-203ENST00000341423 MBD5Q9P267 1494 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 ICAM1P05362 532 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 MYL1P05976 194 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 KLRC1P26715 233 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 PAFAH1B1P43034 410 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 BCAR1P56945 870 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 METTL7BQ6UX53 244 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 WDR48Q8TAF3 677 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms