RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PRPF31Q8WWY3 499 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 NLRP7Q8WX94 980 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ECSITQ9BQ95 431 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CEP44Q9C0F1 390 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TNFRSF10DQ9UBN6 386 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ATP6V1HQ9UI12 483 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 WBP11Q9Y2W2 641 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 FAM25AB3EWG3 89 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 FAM25CB3EWG5 89 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 FAM25GB3EWG6 89 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 RGS13O14921 159 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 PEX1O43933 1283 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ZNF862O60290 1169 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TSC22D2O75157 780 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TNFAIP8O95379 198 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CRYZL1O95825 349 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 MYCP01106 439 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 KRT3P12035 628 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 P4HA1P13674 534 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 PLCG2P16885 1265 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 PTGS2P35354 604 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 SLC39A14Q15043 492 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 CYTH1Q15438 398 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 METTL21CQ5VZV1 264 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 SIRT2Q8IXJ6 389 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 HPS3Q969F9 1004 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 MTMR9Q96QG7 549 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TLE6Q9H808 572 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 VPS45Q9NRW7 570 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 INIPQ9NRY2 104 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ZRANB1Q9UGI0 708 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TELO2Q9Y4R8 837 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 BCORL1Q5H9F3 1711 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 FUOMA2VDF0 154 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 FAM172BPA6NC97 362 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 PLCG1P19174 1290 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ITGAXP20702 1163 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TXKP42681 527 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TAGLNQ01995 201 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ANO4Q32M45 955 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ZNF829Q3KNS6 432 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ANKRD20A4Q4UJ75 823 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 NKX2-3Q8TAU0 364 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 DPF2Q92785 391 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TNIP3Q96KP6 325 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 DHRS9Q9BPW9 319 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 PPCSQ9HAB8 311 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ZC4H2Q9NQZ6 224 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 EHD2Q9NZN4 543 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ZNF518AQ6AHZ1 1483 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 SMIM23A6NLE4 172 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 FANCGO15287 622 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 KCNQ3O43525 872 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 DEAF1O75398 565 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 PCP11498 1178 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 EEF1GP26641 437 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 KRT20P35900 424 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 C21orf59P57076 290 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 PLOD1Q02809 727 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 ZNF844Q08AG5 666 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 BEND3Q5T5X7 828 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 GPR141Q7Z602 305 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 HACE1Q8IYU2 909 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 TTLL11Q8NHH1 800 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 LPIN2Q92539 896 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 RNF25Q96BH1 459 aaPredicted RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 NEUROD6Q96NK8 337 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 LPIN3Q9BQK8 851 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 GPATCH1Q9BRR8 931 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 MRPL9Q9BYD2 267 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 EDEM3Q9BZQ6 932 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 THAP1Q9NVV9 213 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 UTP11Q9Y3A2 253 aaKnown RBP4.42□□□□□ -1.7
NEDD4-201ENST00000338963 SPEF1Q9Y4P9 236 aa4.42□□□□□ -1.7
NEDD4-201ENST00000338963 RSPH10B2B2RC85 870 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 KPNA6O60684 536 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 PHF2O75151 1096 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 PRLP01236 227 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 RSPH10BP0C881 870 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 RGS7P49802 495 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 NAA20P61599 178 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 PDE4DQ08499 809 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 NFE2Q16621 373 aaPredicted RBP4.41□□□□□ -1.7
NEDD4-201ENST00000338963 CTC1Q2NKJ3 1217 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 Q3C1V9 767 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 C5orf22Q49AR2 442 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 SCYL3Q8IZE3 742 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 RFWD2Q8NHY2 731 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 TBC1D16Q8TBP0 767 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 BRSK1Q8TDC3 778 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 SPATA17Q96L03 361 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 TSEN34Q9BSV6 310 aaKnown RBP4.41□□□□□ -1.7
NEDD4-201ENST00000338963 AASDHPPTQ9NRN7 309 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 DNMBPQ6XZF7 1577 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 ANKRD34BA5PLL1 514 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 FAM187AA6NFU0 413 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 F8W810 466 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 BOLA2-SMG1P6H3BVE0 249 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 VWA5AO00534 786 aa4.41□□□□□ -1.7
NEDD4-201ENST00000338963 CSDE1O75534 798 aaKnown RBP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms