RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 CASP1P29466 404 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 ALCAMQ13740 583 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 DSC3Q14574 896 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 POSTNQ15063 836 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 C9orf50Q5SZB4 431 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 TWF2Q6IBS0 349 aaKnown RBP13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 NOTUMQ6P988 496 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 SLC24A5Q71RS6 500 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 APBB1IPQ7Z5R6 666 aaPredicted RBP13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 RTN4RL1Q86UN2 441 aaPredicted RBP13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 TDHQ8IZJ6 230 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 PHOSPHO2Q8TCD6 241 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 CCDC51Q96ER9 411 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 MRPL4Q9BYD3 311 aaKnown RBP13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 TSPYL2Q9H2G4 693 aaPredicted RBP13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 ST6GALNAC4Q9H4F1 302 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 OLFML3Q9NRN5 406 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 AGPAT5Q9NUQ2 364 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 EXOC1Q9NV70 894 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 TBC1D7Q9P0N9 293 aa13.1□□□□□ -0.31
SPTLC1-202ENST00000337841 WDR81Q562E7 1941 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 ALPK3Q96L96 1907 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 A0A1B0GUA9 196 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 A0A1W2PPC1 479 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 TSPAN1O60635 241 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 GCNT3O95395 438 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 RPN1P04843 607 aaKnown RBP13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 STAG3L1P0CL83 205 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 PTMSP20962 102 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 NMT1P30419 496 aaKnown RBP13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 HOXA11P31270 313 aaPredicted RBP13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 MCM4P33991 863 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 FAM189BP81408 668 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 GTF2BQ00403 316 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 DPYDQ12882 1025 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 COASYQ13057 564 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 AMHR2Q16671 573 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 TCTN1Q2MV58 587 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 FAM26FQ5R3K3 315 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 KCNN1Q92952 543 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 HVCN1Q96D96 273 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 TCHPQ9BT92 498 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 GTPBP4Q9BZE4 634 aaKnown RBP13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 CCDC113Q9H0I3 377 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 RMND1Q9NWS8 449 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 LRFN2Q9ULH4 789 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 TBX20Q9UMR3 447 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 EXOC7Q9UPT5 735 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 PCDHB7Q9Y5E2 793 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 ADGRA3Q8IWK6 1321 aa13.09□□□□□ -0.31
SPTLC1-202ENST00000337841 A0A0U1RQF3 1178 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 N4BP3O15049 544 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 MGEA5O60502 916 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 EOMESO95936 686 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 MBD3O95983 291 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 ARF4P18085 180 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 SARSP49591 514 aaKnown RBP13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 RAB27AP51159 221 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 WDR5P61964 334 aaKnown RBP13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 KMT5BQ4FZB7 885 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 NT5DC1Q5TFE4 455 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 ATF7IP2Q5U623 682 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 RASIP1Q5U651 963 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 ZPBP2Q6X784 338 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 MYOCDQ8IZQ8 938 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 SYCP3Q8IZU3 236 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 SMARCE1Q969G3 411 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 PGBD4Q96DM1 585 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 BICD1Q96G01 975 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 CPB2Q96IY4 423 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 GSDMAQ96QA5 445 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 ACCSQ96QU6 501 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 FIZ1Q96SL8 496 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 SLC9A7Q96T83 725 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 ADPGKQ9BRR6 497 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 ZBED2Q9BTP6 218 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 TRAIPQ9BWF2 469 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 TRIM6Q9C030 488 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 PRO3102Q9H379 93 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 TMEM206Q9H813 350 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 CXXC1Q9P0U4 656 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 COLQQ9Y215 455 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 EVPLQ92817 2033 aa13.08□□□□□ -0.32
SPTLC1-202ENST00000337841 TCHHQ07283 1943 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 C9IYK1 514 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 B4GALT5O43286 388 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 KLRC4O43908 158 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 ZNF623O75123 536 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 UPP2O95045 317 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 KIF20AO95235 890 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 PRR29P0C7W0 189 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 ATP2A2P16615 1042 aaKnown RBP13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 LIG4P49917 911 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 PNOCQ13519 176 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 KCNB1Q14721 858 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 ZC2HC1CQ53FD0 456 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms