RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 C12orf60Q5U649 245 aa14.46□□□□□ -0.09
CCDC88C-201ENST00000331194 INTS5Q6P9B9 1019 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-201ENST00000331194 VPS36Q86VN1 386 aa14.46□□□□□ -0.09
CCDC88C-201ENST00000331194 STK32AQ8WU08 396 aa14.46□□□□□ -0.09
CCDC88C-201ENST00000331194 ADAM33Q9BZ11 813 aa14.46□□□□□ -0.09
CCDC88C-201ENST00000331194 SLCO1B3Q9NPD5 702 aa14.46□□□□□ -0.09
CCDC88C-201ENST00000331194 METTL5Q9NRN9 209 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-201ENST00000331194 SMAPO00193 183 aa14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 JAM2P57087 298 aa14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 TBC1D25Q3MII6 688 aa14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 RBM26Q5T8P6 1007 aaKnown RBP14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 SRRM1Q8IYB3 904 aaKnown RBP14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 CTNNBL1Q8WYA6 563 aaPredicted RBP14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 PPP1R12CQ9BZL4 782 aa14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 TRIM7Q9C029 511 aa14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 BMP2KQ9NSY1 1161 aaPredicted RBP14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 SEC63Q9UGP8 760 aaKnown RBP14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 SRP68Q9UHB9 627 aaKnown RBP14.46□□□□□ -0.1
CCDC88C-201ENST00000331194 USP17L5A8MUK1 530 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 RARGP13631 454 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 ATP6V1C1P21283 382 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 SP100P23497 879 aaPredicted RBP14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 CCDC65Q8IXS2 484 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 RFFLQ8WZ73 363 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 CARD9Q9H257 536 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 AAASQ9NRG9 546 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 CYP39A1Q9NYL5 469 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 RASAL2Q9UJF2 1139 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 PHLPP1O60346 1717 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 A0A0A6YYK5 440 aaPredicted RBP14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 PHF2O75151 1096 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 CYP11B2P19099 503 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 PSMC6P62333 389 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 DHX34Q14147 1143 aaKnown RBP14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 ARHGAP44Q17R89 818 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 FOXB2Q5VYV0 432 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 TRIM74Q86UV6 250 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 TRIM73Q86UV7 250 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 RPUSD2Q8IZ73 545 aaKnown RBP14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 SLC30A5Q8TAD4 765 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 BTBD6Q96KE9 485 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 TBC1D10AQ9BXI6 508 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 PITPNM3Q9BZ71 974 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 CHKBQ9Y259 395 aa14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 COL16A1Q07092 1604 aaPredicted RBP14.45□□□□□ -0.1
CCDC88C-201ENST00000331194 POTEFA5A3E0 1075 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 POTEIP0CG38 1075 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 CHRNB2P17787 502 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 RFC4P35249 363 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 ROR2Q01974 943 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 DNAJC3Q13217 504 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 SBK1Q52WX2 424 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 POTEGQ6S5H5 508 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 POTEEQ6S8J3 1075 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 LMNTD2Q8IXW0 634 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 TEX9Q8N6V9 391 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 TGFBRAP1Q8WUH2 860 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 EPAS1Q99814 870 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 DENND2DQ9H6A0 471 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 SFI1A8K8P3 1242 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 RSPH10B2B2RC85 870 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 ATMINO43313 823 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 LRRN2O75325 713 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 SPAG7O75391 227 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 RSPH10BP0C881 870 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 PYGMP11217 842 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 TAC1P20366 129 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 VPS41P49754 854 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 LAMB3Q13751 1172 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 PDIA5Q14554 519 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 RRP1BQ14684 758 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 ZC2HC1CQ53FD0 456 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 RFWD3Q6PCD5 774 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 TXNRD3Q86VQ6 643 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 PCDHA12Q9UN75 941 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 GPR75-ASB3A0A0A6YYF3 556 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 TP73O15350 636 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 T-ENOLP0DO92 83 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 STAT1P42224 750 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 ERFP50548 548 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 DRG2P55039 364 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 DRAP1Q14919 205 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 ZNF746Q6NUN9 644 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 BTNL9Q6UXG8 535 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 MAPKAPK5Q8IW41 473 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 MFN1Q8IWA4 741 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 GALNT15Q8N3T1 639 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 DNAJC9Q8WXX5 260 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 RAB34Q9BZG1 259 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 ASB3Q9Y575 518 aa14.44□□□□□ -0.1
CCDC88C-201ENST00000331194 LRP5O75197 1615 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 SHANK3Q9BYB0 1731 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 O00370 1275 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 RASA1P20936 1047 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 NPEPPSP55786 919 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 KLC1Q07866 573 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 USP4Q13107 963 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 MESDQ14696 234 aa14.43□□□□□ -0.1
CCDC88C-201ENST00000331194 MFSD5Q6N075 450 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms