RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 CYP2B6P20813 491 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 NAA30Q147X3 362 aaPredicted RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 CEP55Q53EZ4 464 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 RAET1EQ8TD07 263 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 GCOM2Q9BZD3 368 aaPredicted RBP10.86□□□□□ -0.67
CHD3-201ENST00000330494 SLC24A3Q9HC58 644 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 KIF20BQ96Q89 1820 aa10.86□□□□□ -0.67
CHD3-201ENST00000330494 LUC7L3O95232 432 aaKnown RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 BRD2P25440 801 aaKnown RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 STAT5BP51692 787 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 FAM102AQ5T9C2 384 aaPredicted RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 FBXO38Q6PIJ6 1188 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 RHOT2Q8IXI1 618 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 C1orf54Q8WWF1 131 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 FSD1LQ9BXM9 530 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 MYOZ2Q9NPC6 264 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 ZNF185O15231 689 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 DYNC1LI2O43237 492 aaPredicted RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 KLK7P49862 253 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 USP11P51784 963 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 FMR1Q06787 632 aaKnown RBP eCLIP10.85□□□□□ -0.672e-6■■□□□ 13.5
CHD3-201ENST00000330494 COG2Q14746 738 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 SF3B3Q15393 1217 aaKnown RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 LRRC23Q53EV4 343 aaPredicted RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 USP49Q70CQ1 688 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 RNF217Q8TC41 542 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 ATXN7L3BQ96GX2 97 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 ADAM33Q9BZ11 813 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 SPON1Q9HCB6 807 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 CEP170BQ9Y4F5 1589 aaPredicted RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 ACCSLQ4AC99 568 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 CPA5Q8WXQ8 436 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 REEP2Q9BRK0 252 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 PHF20Q9BVI0 1012 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 CIITAP33076 1130 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 RGS7P49802 495 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 TRIM28Q13263 835 aaKnown RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 TMED1Q13445 227 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 PDIA6Q15084 440 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 DEFB132Q7Z7B7 95 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 ZKSCAN4Q969J2 545 aaPredicted RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 ANKRD65E5RJM6 399 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 STXBP3O00186 592 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 GGPS1O95749 300 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 CSF1RP07333 972 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 RASA1P20936 1047 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 FASTKD5Q7L8L6 764 aaKnown RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 LRRC71Q8N4P6 559 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 NEK9Q8TD19 979 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 CPB1P15086 417 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 TAL1P17542 331 aaPredicted RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 ZBTB17Q13105 803 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 TRIM67Q6ZTA4 783 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 RNF135Q8IUD6 432 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 IFT43Q96FT9 208 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 DHX35Q9H5Z1 703 aaKnown RBP10.85□□□□□ -0.67
CHD3-201ENST00000330494 ASNSD1Q9NWL6 643 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 BAG5Q9UL15 447 aa10.85□□□□□ -0.67
CHD3-201ENST00000330494 DFFAO00273 331 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 CA4P22748 312 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 NAALADL2Q58DX5 795 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 INTS5Q6P9B9 1019 aaKnown RBP10.84□□□□□ -0.67
CHD3-201ENST00000330494 ZC3H18Q86VM9 953 aaKnown RBP10.84□□□□□ -0.67
CHD3-201ENST00000330494 PPWD1Q96BP3 646 aaKnown RBP10.84□□□□□ -0.67
CHD3-201ENST00000330494 PVALEFA0A1B0GWK0 134 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 PDGFRBP09619 1106 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 YWHAHQ04917 246 aaPredicted RBP10.84□□□□□ -0.67
CHD3-201ENST00000330494 C16orf86Q6ZW13 317 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 CHP1Q99653 195 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 DDX47Q9H0S4 455 aaKnown RBP10.84□□□□□ -0.67
CHD3-201ENST00000330494 TRIM10Q9UDY6 481 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 PRKCBP05771 671 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 ANTXR2P58335 489 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 GPS1Q13098 491 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 LCA5Q86VQ0 697 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 OSBPL9Q96SU4 736 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 HACL1Q9UJ83 578 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 KIFC3Q9BVG8 833 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 C2orf40Q9H1Z8 148 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 KIAA1586Q9HCI6 787 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 SPATA31A5Q5VU36 1347 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 SPATA31A7Q8IWB4 1347 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 PREX1Q8TCU6 1659 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 BAZ2BQ9UIF8 2168 aaKnown RBP10.84□□□□□ -0.67
CHD3-201ENST00000330494 ARHGEF37A1IGU5 675 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 NR1D1P20393 614 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 NUMBP49757 651 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 RNF219Q5W0B1 726 aaPredicted RBP10.84□□□□□ -0.67
CHD3-201ENST00000330494 PDIK1LQ8N165 341 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 RFX7Q2KHR2 1363 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 C6orf222P0C671 652 aaPredicted RBP10.84□□□□□ -0.67
CHD3-201ENST00000330494 STX1BP61266 288 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 TAF1CQ15572 869 aaPredicted RBP10.84□□□□□ -0.67
CHD3-201ENST00000330494 ACAP3Q96P50 834 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 KLC2Q9H0B6 622 aa10.84□□□□□ -0.67
CHD3-201ENST00000330494 KIDINS220Q9ULH0 1771 aa10.83□□□□□ -0.68
CHD3-201ENST00000330494 ATP1A1P05023 1023 aaKnown RBP10.83□□□□□ -0.68
CHD3-201ENST00000330494 HMBSP08397 361 aa10.83□□□□□ -0.68
CHD3-201ENST00000330494 RARBP10826 455 aa10.83□□□□□ -0.68
CHD3-201ENST00000330494 GRIK1P39086 918 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms