RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 KIF3CO14782 793 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 LGR5O75473 907 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 FECHP22830 423 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 VAMP7P51809 220 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 MEA1Q16626 185 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 FIGNQ5HY92 759 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 C1orf220Q5T0J3 134 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 KLHDC7AQ5VTJ3 777 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 DPY19L2P1Q6NXN4 242 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 EFCAB12Q6NXP0 572 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 ZBTB33Q86T24 672 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 ABRAQ8N0Z2 381 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 GANQ9H2C0 597 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 DEF6Q9H4E7 631 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 ST6GALNAC4Q9H4F1 302 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 VTA1Q9NP79 307 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 A0A1W2PQJ5 194 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 MAP2K1Q02750 393 aaPredicted RBP17.97■□□□□ 0.47
USP4-201ENST00000265560 GFPT1Q06210 699 aaPredicted RBP17.97■□□□□ 0.47
USP4-201ENST00000265560 ALCAMQ13740 583 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 ARHGAP44Q17R89 818 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 C17orf99Q6UX52 265 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 CEP72Q9P209 647 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 WNT7BP56706 349 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 ETF1P62495 437 aaKnown RBP17.97■□□□□ 0.47
USP4-201ENST00000265560 LAMTOR4Q0VGL1 99 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 LAMC2Q13753 1193 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 ARHGAP29Q52LW3 1261 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 OR6J1Q8NGC5 347 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 SPAG5Q96R06 1193 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 LACRTQ9GZZ8 138 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 SIX2Q9NPC8 291 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 EXOC7Q9UPT5 735 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 GINS2Q9Y248 185 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 TLL2Q9Y6L7 1015 aa17.97■□□□□ 0.47
USP4-201ENST00000265560 UQCRHLA0A096LP55 91 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 TNPO2O14787 897 aaKnown RBP17.96■□□□□ 0.47
USP4-201ENST00000265560 UQCRHP07919 91 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 STRN3Q13033 797 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 MAP2K5Q13163 448 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 ABHD16BQ9H3Z7 469 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 KCND1Q9NSA2 647 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 ERAP1Q9NZ08 941 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 SUCLA2Q9P2R7 463 aaPredicted RBP17.96■□□□□ 0.47
USP4-201ENST00000265560 AKR1B10O60218 316 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 MYL7Q01449 175 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 TNFAIP2Q03169 654 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 NAA30Q147X3 362 aaPredicted RBP17.96■□□□□ 0.47
USP4-201ENST00000265560 PLPPR4Q7Z2D5 763 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 SLC9A9Q8IVB4 645 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 MKNK1Q9BUB5 465 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 C17orf75Q9HAS0 396 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 ADGRA2Q96PE1 1338 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 SLC15A5A6NIM6 579 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 NLRP11P59045 1033 aaKnown RBP17.96■□□□□ 0.47
USP4-201ENST00000265560 TMEM62Q0P6H9 643 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 SFMBT2Q5VUG0 894 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 OLFML2BQ68BL8 750 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 IQCEQ6IPM2 695 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 KIF18AQ8NI77 898 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 TCHPQ9BT92 498 aa17.96■□□□□ 0.47
USP4-201ENST00000265560 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.96■□□□□ 0.47
USP4-201ENST00000265560 H3BRB1 525 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 VTNP04004 478 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 KLRC1P26715 233 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 NFIL3Q16649 462 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 MORN1Q5T089 497 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 SCARA3Q6AZY7 606 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 C16orf70Q9BSU1 422 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 TUT1Q9H6E5 874 aaKnown RBP17.95■□□□□ 0.46
USP4-201ENST00000265560 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.95■□□□□ 0.46
USP4-201ENST00000265560 PAXBP1Q9Y5B6 917 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 V9GYY5 206 aaPredicted RBP17.95■□□□□ 0.46
USP4-201ENST00000265560 TBC1D8O95759 1140 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 TFRCP02786 760 aaKnown RBP17.95■□□□□ 0.46
USP4-201ENST00000265560 OSTNP61366 133 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 BEX3Q00994 111 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 CAP1Q01518 475 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 ZNF569Q5MCW4 686 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 HGSNATQ68CP4 663 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 KIAA1328Q86T90 577 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 MINDY3Q9H8M7 445 aa17.95■□□□□ 0.46
USP4-201ENST00000265560 B4GALT5O43286 388 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 MYCNP04198 464 aaPredicted RBP17.94■□□□□ 0.46
USP4-201ENST00000265560 RFC5P40937 340 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 NAMPTP43490 491 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 KIF11P52732 1056 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 INTS8Q75QN2 995 aaKnown RBP17.94■□□□□ 0.46
USP4-201ENST00000265560 PSPC1Q8WXF1 523 aaKnown RBP17.94■□□□□ 0.46
USP4-201ENST00000265560 KAT5Q92993 513 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 FAM167AQ96KS9 214 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 ZFYVE28Q9HCC9 887 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 ZSWIM8A7E2V4 1837 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 MYH10P35580 1976 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 INO80B-WBP1J3KQ70 363 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 ARHGAP25P42331 645 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 DUSP28Q4G0W2 176 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 PHLDB3Q6NSJ2 640 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 PPTC7Q8NI37 304 aa17.94■□□□□ 0.46
USP4-201ENST00000265560 FAM212AQ96EL1 285 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms