RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 SUCLA2Q9P2R7 463 aaPredicted RBP12.88□□□□□ -0.35
USHBP1-201ENST00000252597 USP20Q9Y2K6 914 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 ASTN1O14525 1302 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 F5H6K3 240 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 PYGMP11217 842 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 GCFC2P16383 781 aaKnown RBP12.88□□□□□ -0.35
USHBP1-201ENST00000252597 YY1P25490 414 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 TM4SF1P30408 202 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 RNASELQ05823 741 aaKnown RBP12.88□□□□□ -0.35
USHBP1-201ENST00000252597 KLRC3Q07444 240 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 SGO2Q562F6 1265 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 GPATCH4Q5T3I0 446 aaKnown RBP12.88□□□□□ -0.35
USHBP1-201ENST00000252597 PASD1Q8IV76 773 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 CD302Q8IX05 232 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 ZSWIM2Q8NEG5 633 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 P2RX7Q99572 595 aaKnown RBP12.88□□□□□ -0.35
USHBP1-201ENST00000252597 FAM129AQ9BZQ8 928 aa12.88□□□□□ -0.35
USHBP1-201ENST00000252597 COL5A3P25940 1745 aaPredicted RBP12.87□□□□□ -0.35
USHBP1-201ENST00000252597 RASSF9O75901 435 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 BRAFP15056 766 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 MAPK7Q13164 816 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 TMED2Q15363 201 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 EDRF1Q3B7T1 1238 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 RINT1Q6NUQ1 792 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 ESYT2A0FGR8 921 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 PDXKO00764 312 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 SGPL1O95470 568 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 ATP6V1G2O95670 118 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 IFNB1P01574 187 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 HARSP12081 509 aaKnown RBP12.87□□□□□ -0.35
USHBP1-201ENST00000252597 ELF3P78545 371 aaPredicted RBP12.87□□□□□ -0.35
USHBP1-201ENST00000252597 BYSLQ13895 437 aaKnown RBP12.87□□□□□ -0.35
USHBP1-201ENST00000252597 C10orf76Q5T2E6 689 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 POTEAQ6S8J7 498 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 FAM228AQ86W67 206 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 KIFC3Q9BVG8 833 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 ALG13Q9NP73 1137 aaKnown RBP12.87□□□□□ -0.35
USHBP1-201ENST00000252597 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.87□□□□□ -0.35
USHBP1-201ENST00000252597 MYO3BQ8WXR4 1341 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 ENO4A6NNW6 628 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 ANP32DO95626 131 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 GH2P01242 217 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 SPATA31C1P0DKV0 1188 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 AGBL2Q5U5Z8 902 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 PHLDB3Q6NSJ2 640 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 TBC1D16Q8TBP0 767 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 DHX38Q92620 1227 aaKnown RBP12.87□□□□□ -0.35
USHBP1-201ENST00000252597 CALR3Q96L12 384 aaKnown RBP12.87□□□□□ -0.35
USHBP1-201ENST00000252597 PI4K2AQ9BTU6 479 aa12.87□□□□□ -0.35
USHBP1-201ENST00000252597 ABCB11O95342 1321 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 GOLGA8SH3BPF8 625 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 GOLGA8MH3BSY2 632 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 TGFB1I1O43294 461 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 BCRP11274 1271 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 SYCP2LQ5T4T6 812 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 TTC27Q6P3X3 843 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 RFX8Q6ZV50 586 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 ARHGEF19Q8IW93 802 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 SYT2Q8N9I0 419 aaPredicted RBP12.86□□□□□ -0.35
USHBP1-201ENST00000252597 AGPAT1Q99943 283 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 NUP85Q9BW27 656 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 CNOT10Q9H9A5 744 aaKnown RBP12.86□□□□□ -0.35
USHBP1-201ENST00000252597 AGAP1Q9UPQ3 857 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 PCDHA2Q9Y5H9 948 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 CASZ1Q86V15 1759 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 SERPINB2P05120 415 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 PDHA1P08559 390 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 KRT15P19012 456 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 SEPT7Q16181 437 aaKnown RBP12.86□□□□□ -0.35
USHBP1-201ENST00000252597 PPP4R3CPQ6ZMV5 832 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 TAOK1Q7L7X3 1001 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 SUPT20HQ8NEM7 779 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 SPDL1Q96EA4 605 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 CBWD1Q9BRT8 395 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 TRIM7Q9C029 511 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 HOMER3Q9NSC5 361 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 NKIRAS1Q9NYS0 192 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 APEX2Q9UBZ4 518 aa12.86□□□□□ -0.35
USHBP1-201ENST00000252597 ECEL1O95672 775 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 RPA1P27694 616 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 SHMT1P34896 483 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 PTENP60484 403 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 KRT17Q04695 432 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 EAPPQ56P03 285 aaPredicted RBP12.85□□□□□ -0.35
USHBP1-201ENST00000252597 SLC10A5Q5PT55 438 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 ERMARDQ5T6L9 678 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 PRR5LQ6MZQ0 368 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 C6orf89Q6UWU4 347 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 RNF207Q6ZRF8 634 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 INTS8Q75QN2 995 aaKnown RBP12.85□□□□□ -0.35
USHBP1-201ENST00000252597 PRELID2Q8N945 189 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 AGAP11Q8TF27 550 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 YIPF3Q9GZM5 350 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 ETNK1Q9HBU6 452 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 GPRC5CQ9NQ84 441 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 TMEM59LQ9UK28 342 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 RREB1Q92766 1687 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 CLRN2A0PK11 232 aa12.85□□□□□ -0.35
USHBP1-201ENST00000252597 KIAA0391O15091 583 aaKnown RBP12.85□□□□□ -0.35
USHBP1-201ENST00000252597 SLC8A1P32418 973 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms