RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 BOLA2-SMG1P6H3BVE0 249 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 SNAP23O00161 211 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 RASA4O43374 803 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 DKC1O60832 514 aaKnown RBP eCLIP15.69■□□□□ 0.1
PTPRA-201ENST00000216877 DCTN3O75935 186 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 SV2BQ7L1I2 683 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 HEATR3Q7Z4Q2 680 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 CKAP2Q8WWK9 683 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 FAM89AQ96GI7 184 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 FNBP1Q96RU3 617 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 ERVK-5Q9HDB9 667 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 NUP188Q5SRE5 1749 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 STARD3NLO95772 234 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 FOXO4P98177 505 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 CACNB1Q02641 598 aaPredicted RBP15.69■□□□□ 0.1
PTPRA-201ENST00000216877 TXNRD1Q16881 649 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 MDH1BQ5I0G3 518 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 EPM2AIP1Q7L775 607 aaPredicted RBP15.69■□□□□ 0.1
PTPRA-201ENST00000216877 TPCN2Q8NHX9 752 aa15.69■□□□□ 0.1
PTPRA-201ENST00000216877 SH3RF3Q8TEJ3 882 aaPredicted RBP15.69■□□□□ 0.1
PTPRA-201ENST00000216877 EPB41L4AQ9HCS5 686 aaPredicted RBP15.69■□□□□ 0.1
PTPRA-201ENST00000216877 C1orf167Q5SNV9 1468 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 RIPK2O43353 540 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 ATP6V1B1P15313 513 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 ALOX15P16050 662 aaPredicted RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 RPL21P46778 160 aaKnown RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 R3HDM1Q15032 1099 aaKnown RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 C6orf163Q5TEZ5 329 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 SCUBE1Q8IWY4 988 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 SLC25A41Q8N5S1 370 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 GLIS3Q8NEA6 775 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 NRG4Q8WWG1 115 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 TIPINQ9BVW5 301 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 PFDN4Q9NQP4 134 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 TRMT112Q9UI30 125 aaKnown RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 TMEM59LQ9UK28 342 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 LSM1O15116 133 aaKnown RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 PCCAP05165 728 aaPredicted RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 PHKA1P46020 1223 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 PARP6Q2NL67 630 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 ACSBG2Q5FVE4 666 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 CCDC24Q8N4L8 307 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 ERLEC1Q96DZ1 483 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 NR1H4Q96RI1 486 aaPredicted RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 ASCC2Q9H1I8 757 aaPredicted RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 RNF41Q9H4P4 317 aaPredicted RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 MRC1P22897 1456 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 TRIM43BA6NCK2 446 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 KRT18P05783 430 aaKnown RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 MPP2Q14168 576 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 PABPC1LQ4VXU2 614 aaKnown RBP15.68■□□□□ 0.1
PTPRA-201ENST00000216877 RASSF3Q86WH2 238 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 OLFM3Q96PB7 478 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 COMMD3-BMI1R4GMX3 469 aa15.68■□□□□ 0.1
PTPRA-201ENST00000216877 USP1O94782 785 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 LCA5LO95447 670 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 CYP1A1P04798 512 aaPredicted RBP15.67■□□□□ 0.1
PTPRA-201ENST00000216877 NUDT17P0C025 328 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 MLH1P40692 756 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 SATL1Q86VE3 508 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 SYCE1Q8N0S2 351 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 EIF1ADQ8N9N8 165 aaKnown RBP15.67■□□□□ 0.1
PTPRA-201ENST00000216877 KIAA0895Q8NCT3 520 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 MORC4Q8TE76 937 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 SPDYE16A6NNV3 312 aaPredicted RBP15.67■□□□□ 0.1
PTPRA-201ENST00000216877 CCNT1O60563 726 aaKnown RBP15.67■□□□□ 0.1
PTPRA-201ENST00000216877 ESRRAP11474 423 aaPredicted RBP15.67■□□□□ 0.1
PTPRA-201ENST00000216877 CCNB1P14635 433 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 CCR3P51677 355 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 ASTE1Q2TB18 679 aaPredicted RBP15.67■□□□□ 0.1
PTPRA-201ENST00000216877 C4orf50Q6ZRC1 276 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 ZSCAN29Q8IWY8 852 aaPredicted RBP15.67■□□□□ 0.1
PTPRA-201ENST00000216877 C4orf33Q8N1A6 199 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.67■□□□□ 0.16e-12■■■□□ 19.2
PTPRA-201ENST00000216877 ATP8B4Q8TF62 1192 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 FAM136AQ96C01 138 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 USP20Q9Y2K6 914 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 CASZ1Q86V15 1759 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 CAPN15O75808 1086 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 PSMG1O95456 288 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 CCDC62Q6P9F0 684 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 MARK2Q7KZI7 788 aaKnown RBP15.67■□□□□ 0.1
PTPRA-201ENST00000216877 ZNF571Q7Z3V5 609 aaPredicted RBP15.67■□□□□ 0.1
PTPRA-201ENST00000216877 BLIDQ8IZY5 108 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 GPR108Q9NPR9 543 aa15.67■□□□□ 0.1
PTPRA-201ENST00000216877 SCG2P13521 617 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 CYP11B2P19099 503 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 PTPN4P29074 926 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 MTFR1Q15390 333 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 LRRC8BQ6P9F7 803 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 CCDC125Q86Z20 511 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 PIP4K2CQ8TBX8 421 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 TACC3Q9Y6A5 838 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 PFASO15067 1338 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 PITPNM2Q9BZ72 1349 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 CA4P22748 312 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 FAM47AQ5JRC9 791 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 FYB2Q5VWT5 728 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 NAT14Q8WUY8 206 aa15.66■□□□□ 0.1
PTPRA-201ENST00000216877 USP40Q9NVE5 1235 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms