RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 AGAP1Q9UPQ3 857 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 ADSSP30520 456 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 MAP2K1Q02750 393 aaPredicted RBP11.56□□□□□ -0.56
USP28-201ENST00000003302 LONRF1Q17RB8 773 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 PARVGQ9HBI0 331 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 PI4KBQ9UBF8 816 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 APEX2Q9UBZ4 518 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 GMNCA6NCL1 334 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 EXOC3O60645 756 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 PPP2R2AP63151 447 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 DR1Q01658 176 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 ADCY2Q08462 1091 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 E2F5Q15329 346 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 SIX1Q15475 284 aaPredicted RBP11.56□□□□□ -0.56
USP28-201ENST00000003302 RPUSD2Q8IZ73 545 aaKnown RBP11.56□□□□□ -0.56
USP28-201ENST00000003302 TMEM39BQ9GZU3 492 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 SLC40A1Q9NP59 571 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 DMAC2Q9NW81 257 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 ECE2O60344 883 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 DLATP10515 647 aaKnown RBP11.56□□□□□ -0.56
USP28-201ENST00000003302 DRD4P21917 467 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 SLFN12Q8IYM2 578 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 TRIM33Q9UPN9 1127 aa11.56□□□□□ -0.56
USP28-201ENST00000003302 R3HDM2Q9Y2K5 976 aaKnown RBP11.56□□□□□ -0.56
USP28-201ENST00000003302 A8MUI8 341 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 PTENP60484 403 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 EMC10Q5UCC4 262 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 CYP4X1Q8N118 509 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 RFFLQ8WZ73 363 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 PRMT1Q99873 361 aaKnown RBP11.55□□□□□ -0.56
USP28-201ENST00000003302 NUCKS1Q9H1E3 243 aaKnown RBP11.55□□□□□ -0.56
USP28-201ENST00000003302 EFCC1Q9HA90 598 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 CHST7Q9NS84 486 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 ABCF3Q9NUQ8 709 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 AMFRQ9UKV5 643 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 HMGB1P1B2RPK0 211 aaPredicted RBP11.55□□□□□ -0.56
USP28-201ENST00000003302 CTNND1O60716 968 aaKnown RBP11.55□□□□□ -0.56
USP28-201ENST00000003302 EGFRP00533 1210 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 RARAP10276 462 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 TCF4P15884 667 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 PEX5P50542 639 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 BFSP1Q12934 665 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 GLIS1Q8NBF1 620 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 ATXN2LQ8WWM7 1075 aaKnown RBP11.55□□□□□ -0.56
USP28-201ENST00000003302 IQCDQ96DY2 449 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 ZNF317Q96PQ6 595 aaPredicted RBP11.55□□□□□ -0.56
USP28-201ENST00000003302 OLFML3Q9NRN5 406 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 NYAP2Q9P242 653 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 BTNL10A8MVZ5 291 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 G3V3G9 751 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 H0YHG0 523 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 CALUO43852 315 aaPredicted RBP11.55□□□□□ -0.56
USP28-201ENST00000003302 RASSF9O75901 435 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 ACSL3O95573 720 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 NF2P35240 595 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 PSMC2P35998 433 aaKnown RBP11.55□□□□□ -0.56
USP28-201ENST00000003302 DCAF8Q5TAQ9 597 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 HHIPL2Q6UWX4 724 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 LRRC34Q8IZ02 419 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 TATDN2Q93075 761 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 SELENOSQ9BQE4 189 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 ERP44Q9BS26 406 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 STK33Q9BYT3 514 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 RNF14Q9UBS8 474 aa11.55□□□□□ -0.56
USP28-201ENST00000003302 CLDN3O15551 220 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 CIITAP33076 1130 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 KLHL11Q9NVR0 708 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 CTTNBP2NLQ9P2B4 639 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 SLC16A4O15374 487 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 GAS7O60861 476 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 MYL7Q01449 175 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 CPXCR1Q8N123 301 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 IPO4Q8TEX9 1081 aaKnown RBP11.54□□□□□ -0.56
USP28-201ENST00000003302 ZKSCAN4Q969J2 545 aaPredicted RBP11.54□□□□□ -0.56
USP28-201ENST00000003302 PBKQ96KB5 322 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 CCDC113Q9H0I3 377 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 KAT6AQ92794 2004 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 K7ENM7 598 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 UPP2O95045 317 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 PPP4R3CPQ6ZMV5 832 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 SLF2Q8IX21 1173 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 EPS8L1Q8TE68 723 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 TLCD1Q96CP7 247 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 LRRC27Q9C0I9 530 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 EIF4E1BA6NMX2 242 aaKnown RBP11.54□□□□□ -0.56
USP28-201ENST00000003302 PPFIA2O75334 1257 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 RAD17O75943 681 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 FSBPO95073 299 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 ACCSLQ4AC99 568 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 ANKRD20A8PQ5CZ79 823 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 FOXR2Q6PJQ5 311 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 PPM1KQ8N3J5 372 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 CTNNBL1Q8WYA6 563 aaPredicted RBP11.54□□□□□ -0.56
USP28-201ENST00000003302 ZNF577Q9BSK1 485 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 TMEM117Q9H0C3 514 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 VCPKMTQ9H867 229 aa11.54□□□□□ -0.56
USP28-201ENST00000003302 ADGRA3Q8IWK6 1321 aa11.53□□□□□ -0.56
USP28-201ENST00000003302 IPO5O00410 1097 aaKnown RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 MRPS9P82933 396 aaKnown RBP11.53□□□□□ -0.56
USP28-201ENST00000003302 FAM133BQ5BKY9 247 aaKnown RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms