RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 MBTPS2O43462 519 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 EIF5BO60841 1220 aaKnown RBP11.48□□□□□ -0.57
SCN1A-222ENST00000642141 ZC3H11AO75152 810 aaKnown RBP eCLIP11.48□□□□□ -0.57
SCN1A-222ENST00000642141 GLP2RO95838 553 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 EOMESO95936 686 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 RFC5P40937 340 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 TECP42680 631 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 AFF1P51825 1210 aaKnown RBP11.48□□□□□ -0.57
SCN1A-222ENST00000642141 BCAR1P56945 870 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 KRT17Q04695 432 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 ZP2Q05996 745 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 C8orf34Q49A92 452 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 TMC7Q7Z402 723 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 FERMT3Q86UX7 667 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 EFHBQ8N7U6 833 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 AUTS2Q8WXX7 1259 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 MRPS27Q92552 414 aaKnown RBP11.48□□□□□ -0.57
SCN1A-222ENST00000642141 MTMR9Q96QG7 549 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 HSD17B14Q9BPX1 270 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 C1QTNF1Q9BXJ1 281 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 INO80BQ9C086 356 aaPredicted RBP11.48□□□□□ -0.57
SCN1A-222ENST00000642141 CHST12Q9NRB3 414 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 FAM105AQ9NUU6 356 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 PUF60Q9UHX1 559 aaKnown RBP11.48□□□□□ -0.57
SCN1A-222ENST00000642141 FAM50BQ9Y247 325 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 PCDHB2Q9Y5E7 798 aa11.48□□□□□ -0.57
SCN1A-222ENST00000642141 HOXA11P31270 313 aaPredicted RBP11.47□□□□□ -0.57
SCN1A-222ENST00000642141 ALDH7A1P49419 539 aaKnown RBP11.47□□□□□ -0.57
SCN1A-222ENST00000642141 UBE3AQ05086 875 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 RNASELQ05823 741 aaKnown RBP11.47□□□□□ -0.57
SCN1A-222ENST00000642141 GNL2Q13823 731 aaKnown RBP11.47□□□□□ -0.57
SCN1A-222ENST00000642141 NBR1Q14596 966 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 SMAD2Q15796 467 aaKnown RBP11.47□□□□□ -0.57
SCN1A-222ENST00000642141 CSPP1Q1MSJ5 1256 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 GLB1LQ6UWU2 654 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 FAM43BQ6ZT52 329 aaPredicted RBP11.47□□□□□ -0.57
SCN1A-222ENST00000642141 TMEM173Q86WV6 379 aaPredicted RBP11.47□□□□□ -0.57
SCN1A-222ENST00000642141 ADHFE1Q8IWW8 467 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 SLC39A11Q8N1S5 342 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 FAM184AQ8NB25 1140 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 ASAP3Q8TDY4 903 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 TCP11Q8WWU5 503 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 CPB2Q96IY4 423 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 MSLNLQ96KJ4 702 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 CCDC43Q96MW1 224 aaKnown RBP11.47□□□□□ -0.57
SCN1A-222ENST00000642141 MTRQ99707 1265 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 LRFN3Q9BTN0 628 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 POLD4Q9HCU8 107 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 C11orf16Q9NQ32 467 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 XPNPEP1Q9NQW7 623 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 AGPAT5Q9NUQ2 364 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 DNAJB4Q9UDY4 337 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 NCOR1O75376 2440 aa11.47□□□□□ -0.57
SCN1A-222ENST00000642141 PI4K2BG5E9Z4 385 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 INO80B-WBP1J3KQ70 363 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 FSCN2O14926 492 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 B4GALT3O60512 393 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 USO1O60763 962 aaKnown RBP11.46□□□□□ -0.57
SCN1A-222ENST00000642141 OFD1O75665 1012 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 CXCL14O95715 111 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 POMCP01189 267 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 PLCB3Q01970 1234 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 SMAD4Q13485 552 aaKnown RBP11.46□□□□□ -0.57
SCN1A-222ENST00000642141 DUSP6Q16828 381 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 NOMO2Q5JPE7 1267 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 TMEM31Q5JXX7 168 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 UBXN11Q5T124 520 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 SRGAP1Q7Z6B7 1085 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 CDR2LQ86X02 465 aaPredicted RBP11.46□□□□□ -0.57
SCN1A-222ENST00000642141 ZNF280BQ86YH2 543 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 EXOC8Q8IYI6 725 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 BCL7CQ8WUZ0 217 aaPredicted RBP11.46□□□□□ -0.57
SCN1A-222ENST00000642141 LLPHQ9BRT6 129 aaKnown RBP11.46□□□□□ -0.57
SCN1A-222ENST00000642141 APOL6Q9BWW8 343 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 EIF2AQ9BY44 585 aaKnown RBP11.46□□□□□ -0.57
SCN1A-222ENST00000642141 NRDE2Q9H7Z3 1164 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 GPRC5CQ9NQ84 441 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 TBC1D13Q9NVG8 400 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 CDH22Q9UJ99 828 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 USP15Q9Y4E8 981 aaPredicted RBP11.46□□□□□ -0.57
SCN1A-222ENST00000642141 HES2Q9Y543 173 aa11.46□□□□□ -0.57
SCN1A-222ENST00000642141 ASAP2O43150 1006 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 MED24O75448 989 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 DDHD2O94830 711 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 ERLIN2O94905 339 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 SSBP05455 408 aaKnown RBP eCLIP11.45□□□□□ -0.58
SCN1A-222ENST00000642141 SPATA31C1P0DKV0 1188 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 SKIP12755 728 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 SP100P23497 879 aaPredicted RBP11.45□□□□□ -0.58
SCN1A-222ENST00000642141 PPM1AP35813 382 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 RARRES1P49788 294 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 TTC38Q5R3I4 469 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 PDE12Q6L8Q7 609 aaKnown RBP11.45□□□□□ -0.58
SCN1A-222ENST00000642141 KANK3Q6NY19 840 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 POTEGQ6S5H5 508 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 PPP4R3CPQ6ZMV5 832 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 AGMOQ6ZNB7 445 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 CATSPER3Q86XQ3 398 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 VPS52Q8N1B4 723 aa11.45□□□□□ -0.58
SCN1A-222ENST00000642141 MRPL43Q8N983 215 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms