RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ATP2A1O14983 1001 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 NPIPA8P0DM63 369 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 NCAM1P13591 858 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PHBP35232 272 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CASP8Q14790 479 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 UAP1L1Q3KQV9 507 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 MMEL1Q495T6 779 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ADALQ6DHV7 355 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CNNM3Q8NE01 707 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 DEPTORQ8TB45 409 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ERO1AQ96HE7 468 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 C10orf88Q9H8K7 445 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 BLOC1S4Q9NUP1 217 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CRYL1Q9Y2S2 319 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PCDHB13Q9Y5F0 798 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SMCO2A6NFE2 343 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 NCF1BA6NI72 391 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 NCF1CA8MVU1 366 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CPP00450 1065 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SLC5A1P13866 664 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CENPCQ03188 943 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 GALNT1Q10472 559 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CNSTQ6PJW8 725 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF554Q86TJ5 538 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SEC62Q99442 399 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 HEMGNQ9BXL5 484 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 GALNT8Q9NY28 637 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 GGT7Q9UJ14 662 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SCAF4O95104 1147 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TMPRSS15P98073 1019 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TP53BP2Q13625 1128 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 EFTUD2Q15029 972 aaKnown RBP eCLIP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TIGD3Q6B0B8 471 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 RUFY4Q6ZNE9 571 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 FBXO41Q8TF61 875 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CAPSLQ8WWF8 208 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ASZ1Q8WWH4 475 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CEP19Q96LK0 163 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CARD14Q9BXL6 1004 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TMEM245Q9H330 911 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 THAP9Q9H5L6 903 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SPTBN1Q01082 2364 aaKnown RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 AHCYL1O43865 530 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 KPNA6O60684 536 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PPP3CCP48454 512 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ST5P78524 1137 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TMEM62Q0P6H9 643 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 BORAQ6PGQ7 559 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SLC22A9Q8IVM8 553 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PSD2Q9BQI7 771 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 OSGEPL1Q9H4B0 414 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CHRAC1Q9NRG0 131 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 NDUFA13Q9P0J0 144 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC171Q6TFL3 1326 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 H3BUI4 141 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 ZSCAN9O15535 394 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 EDN3P14138 238 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 TBC1D25Q3MII6 688 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 LDLRAP1Q5SW96 308 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 RNF25Q96BH1 459 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-221ENST00000641996 MTERF3Q96E29 417 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 COX16Q9P0S2 106 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 SPASTQ9UBP0 616 aa3.81□□□□□ -1.8
SCN1A-221ENST00000641996 PROM1O43490 865 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 POU2F1P14859 743 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 GMFBP60983 142 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 USP39Q53GS9 565 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PNPT1Q8TCS8 783 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CCDC42Q96M95 316 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 LEMD3Q9Y2U8 911 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ZGRF1Q86YA3 2104 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 C21orf2O43822 256 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 SKIP12755 728 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 GLULP15104 373 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 HOXD12P35452 270 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PHKA1P46020 1223 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CCT3P49368 545 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 FXR2P51116 673 aaKnown RBP eCLIP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PPP1R42Q7Z4L9 355 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TAGAPQ8N103 731 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PA2G4Q9UQ80 394 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ESYT2A0FGR8 921 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 POTEB3A0JP26 581 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TMEM247A6NEH6 219 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TNNI3P19429 210 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 SPAG1Q07617 926 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PPIDQ08752 370 aaKnown RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 STX3Q13277 289 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TRIP13Q15645 432 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 POTEBQ6S5H4 581 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 TAS1R3Q7RTX0 852 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 BPHLQ86WA6 291 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-221ENST00000641996 CAMKK1Q8N5S9 505 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ASB2Q96Q27 587 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 SLF1Q9BQI6 1058 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 ZSCAN32Q9NX65 697 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 PLAAQ9Y263 795 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 WDR19Q8NEZ3 1342 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 KANSL1LA0AUZ9 987 aa3.8□□□□□ -1.8
SCN1A-221ENST00000641996 MTX2O75431 263 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms