RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SLC2A4RGQ9NR83 387 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 SPTLC3Q9NUV7 552 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.16□□□□□ -1.42
CD44-239ENST00000639002 ING3Q9NXR8 418 aa6.16□□□□□ -1.42
CD44-239ENST00000639002 MRPL42Q9Y6G3 142 aaKnown RBP6.16□□□□□ -1.42
CD44-239ENST00000639002 KLRG2A4D1S0 409 aaPredicted RBP6.15□□□□□ -1.42
CD44-239ENST00000639002 PCDH8O95206 1070 aa6.15□□□□□ -1.42
CD44-239ENST00000639002 CFBP00751 764 aa6.15□□□□□ -1.42
CD44-239ENST00000639002 CD40P25942 277 aa6.15□□□□□ -1.42
CD44-239ENST00000639002 MCM7P33993 719 aa6.15□□□□□ -1.42
CD44-239ENST00000639002 CD69Q07108 199 aa6.15□□□□□ -1.42
CD44-239ENST00000639002 FKBP15Q5T1M5 1219 aa6.15□□□□□ -1.42
CD44-239ENST00000639002 HTR3DQ70Z44 454 aa6.15□□□□□ -1.42
CD44-239ENST00000639002 ZNF512Q96ME7 567 aaPredicted RBP6.15□□□□□ -1.42
CD44-239ENST00000639002 TRIM8Q9BZR9 551 aa6.15□□□□□ -1.42
CD44-239ENST00000639002 SLITRK6Q9H5Y7 841 aa6.15□□□□□ -1.42
CD44-239ENST00000639002 C14orf93Q9H972 538 aaKnown RBP6.15□□□□□ -1.42
CD44-239ENST00000639002 MTSS1O43312 755 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 PFKMP08237 780 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 CRHR2Q13324 411 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 TOB2Q14106 344 aaPredicted RBP6.14□□□□□ -1.43
CD44-239ENST00000639002 GPR158Q5T848 1215 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 KRT40Q6A162 431 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 Q6ZPA2 131 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 ZNF627Q7L945 461 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 GPR101Q96P66 508 aaPredicted RBP6.14□□□□□ -1.43
CD44-239ENST00000639002 FDXACB1Q9BRP7 624 aaPredicted RBP6.14□□□□□ -1.43
CD44-239ENST00000639002 PARPBPQ9NWS1 579 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 GPRC5BQ9NZH0 403 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 MSRAQ9UJ68 235 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 RCAN3Q9UKA8 241 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 TMPRSS11EQ9UL52 423 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 SYNPO2Q9UMS6 1093 aa6.14□□□□□ -1.43
CD44-239ENST00000639002 PRSS38A1L453 326 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 ADCYAP1R1P41586 468 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 MAN2A2P49641 1150 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 KPNA1P52294 538 aaPredicted RBP6.13□□□□□ -1.43
CD44-239ENST00000639002 TGFB2P61812 414 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 PHC1P78364 1004 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 DPTQ07507 201 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 SPIDRQ14159 915 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 TERF2Q15554 542 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 KIAA0907Q7Z7F0 614 aaPredicted RBP6.13□□□□□ -1.43
CD44-239ENST00000639002 LYSMD2Q8IV50 215 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 GSPT2Q8IYD1 628 aaKnown RBP6.13□□□□□ -1.43
CD44-239ENST00000639002 ZNF483Q8TF39 744 aaPredicted RBP6.13□□□□□ -1.43
CD44-239ENST00000639002 NEU4Q8WWR8 484 aaPredicted RBP6.13□□□□□ -1.43
CD44-239ENST00000639002 CHFRQ96EP1 664 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 HIST1H2AHQ96KK5 128 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 MNTQ99583 582 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 HIST1H2AJQ99878 128 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 IKZF4Q9H2S9 585 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 NCDNQ9UBB6 729 aa6.13□□□□□ -1.43
CD44-239ENST00000639002 A0A087X0B3 334 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 GRXCR1A8MXD5 290 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 SEC24DO94855 1032 aaPredicted RBP6.12□□□□□ -1.43
CD44-239ENST00000639002 FSBPO95073 299 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 LY86O95711 162 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 PTTG1IPP53801 180 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 MAN2A1Q16706 1144 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 ESPNLQ6ZVH7 1005 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 LDLRAD3Q86YD5 345 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 PASD1Q8IV76 773 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 ZNF610Q8N9Z0 462 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 MDGA1Q8NFP4 955 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 CLIP3Q96DZ5 547 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 UIMC1Q96RL1 719 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 GPR87Q9BY21 358 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 PRDM12Q9H4Q4 367 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 USP36Q9P275 1121 aaKnown RBP6.12□□□□□ -1.43
CD44-239ENST00000639002 PCDHB6Q9Y5E3 794 aa6.12□□□□□ -1.43
CD44-239ENST00000639002 GSG1L2A8MUP6 293 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 MAFGO15525 162 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 CDC45O75419 566 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 PEX11BO96011 259 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 KRT4P19013 534 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 NPEPPSP55786 919 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 CNGB1Q14028 1251 aaPredicted RBP6.11□□□□□ -1.43
CD44-239ENST00000639002 FAM214AQ32MH5 1076 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 CRB2Q5IJ48 1285 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 SLC41A1Q8IVJ1 513 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 UNC5BQ8IZJ1 945 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 PPM1KQ8N3J5 372 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 ATXN2LQ8WWM7 1075 aaKnown RBP6.11□□□□□ -1.43
CD44-239ENST00000639002 FEZ1Q99689 392 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 TRPS1Q9UHF7 1281 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 USP18Q9UMW8 372 aa6.11□□□□□ -1.43
CD44-239ENST00000639002 OVOL3O00110 214 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 HOXA3O43365 443 aaPredicted RBP6.1□□□□□ -1.43
CD44-239ENST00000639002 ALDH1A2O94788 518 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 FKBP9O95302 570 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 MAKP20794 623 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 LSSP48449 732 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 SCNN1BP51168 640 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 NAIF1Q69YI7 327 aaPredicted RBP6.1□□□□□ -1.43
CD44-239ENST00000639002 MFSD5Q6N075 450 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 PCSK4Q6UW60 755 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 FKBP9P1Q75LS8 142 aa6.1□□□□□ -1.43
CD44-239ENST00000639002 CXorf67Q86X51 503 aaPredicted RBP6.1□□□□□ -1.43
CD44-239ENST00000639002 AHI1Q8N157 1196 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms