RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF689Q96CS4 500 aaPredicted RBP20.24■□□□□ 0.83
CLN3-259ENST00000637551 IFT74Q96LB3 600 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 CSRNP2Q9H175 543 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 ODF2LQ9ULJ1 636 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 TRANK1O15050 2925 aa20.24■□□□□ 0.83
CLN3-259ENST00000637551 E9PMD0 336 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 DGKIO75912 1065 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 PBX2P40425 430 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 SLC12A3P55017 1021 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 FNDC1Q4ZHG4 1894 aaPredicted RBP20.23■□□□□ 0.83
CLN3-259ENST00000637551 RINT1Q6NUQ1 792 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 CCDC73Q6ZRK6 1079 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 CATSPER4Q7RTX7 472 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 ZBTB8OSQ8IWT0 167 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 CNNM3Q8NE01 707 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 ASAP3Q8TDY4 903 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 YME1L1Q96TA2 773 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 PYM1Q9BRP8 204 aaKnown RBP20.23■□□□□ 0.83
CLN3-259ENST00000637551 RBM19Q9Y4C8 960 aaKnown RBP20.23■□□□□ 0.83
CLN3-259ENST00000637551 ADGRA3Q8IWK6 1321 aa20.23■□□□□ 0.83
CLN3-259ENST00000637551 CHD7Q9P2D1 2997 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 NLRC5Q86WI3 1866 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 H0YCG3 227 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 CUTAO60888 179 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 ERLIN2O94905 339 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 CA3P07451 260 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 SRGAP2CP0DJJ0 459 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 MARCKSP29966 332 aaPredicted RBP20.22■□□□□ 0.83
CLN3-259ENST00000637551 MBTD1Q05BQ5 628 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 PKP1Q13835 747 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 FAM102BQ5T8I3 360 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 KCNK18Q7Z418 384 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 KSR1Q8IVT5 923 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 PPP1R16BQ96T49 567 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 NTPCRQ9BSD7 190 aaKnown RBP20.22■□□□□ 0.83
CLN3-259ENST00000637551 CUEDC2Q9H467 287 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 PRMT7Q9NVM4 692 aaPredicted RBP20.22■□□□□ 0.83
CLN3-259ENST00000637551 PCDHB7Q9Y5E2 793 aa20.22■□□□□ 0.83
CLN3-259ENST00000637551 MGEA5O60502 916 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 PLA2G4BP0C869 781 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 PLCG1P19174 1290 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 DDIT3P35638 169 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 RABGGTBP53611 331 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 ERVK-21P61565 698 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 KRT85P78386 507 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 TAP1Q03518 808 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 GRIN1Q05586 938 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 DMP1Q13316 513 aaPredicted RBP20.21■□□□□ 0.83
CLN3-259ENST00000637551 NOTUMQ6P988 496 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 RASSF8Q8NHQ8 419 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 SPIRE2Q8WWL2 714 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 LARP4BQ92615 738 aaKnown RBP20.21■□□□□ 0.83
CLN3-259ENST00000637551 RAD54LQ92698 747 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 CLP1Q92989 425 aaKnown RBP20.21■□□□□ 0.83
CLN3-259ENST00000637551 TGS1Q96RS0 853 aaKnown RBP20.21■□□□□ 0.83
CLN3-259ENST00000637551 NKX2-4Q9H2Z4 354 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 RCOR1Q9UKL0 485 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 LRFN2Q9ULH4 789 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 BDP1A6H8Y1 2624 aa20.21■□□□□ 0.83
CLN3-259ENST00000637551 POU3F3P20264 500 aaPredicted RBP20.2■□□□□ 0.82
CLN3-259ENST00000637551 HOXD11P31277 338 aaPredicted RBP20.2■□□□□ 0.82
CLN3-259ENST00000637551 ZNF598Q86UK7 904 aaKnown RBP20.2■□□□□ 0.82
CLN3-259ENST00000637551 ATXN2LQ8WWM7 1075 aaKnown RBP20.2■□□□□ 0.82
CLN3-259ENST00000637551 SCAND2PQ9GZW5 306 aaPredicted RBP20.2■□□□□ 0.82
CLN3-259ENST00000637551 FZD8Q9H461 694 aa20.2■□□□□ 0.82
CLN3-259ENST00000637551 MINDY3Q9H8M7 445 aa20.2■□□□□ 0.82
CLN3-259ENST00000637551 MAGEF1Q9HAY2 307 aa20.2■□□□□ 0.82
CLN3-259ENST00000637551 BMP2KQ9NSY1 1161 aaPredicted RBP20.2■□□□□ 0.82
CLN3-259ENST00000637551 BLOC1S4Q9NUP1 217 aa20.2■□□□□ 0.82
CLN3-259ENST00000637551 LARSQ9P2J5 1176 aaKnown RBP20.2■□□□□ 0.82
CLN3-259ENST00000637551 CIZ1Q9ULV3 898 aaPredicted RBP20.2■□□□□ 0.82
CLN3-259ENST00000637551 PIN4Q9Y237 131 aaKnown RBP20.2■□□□□ 0.82
CLN3-259ENST00000637551 ZDHHC9Q9Y397 364 aa20.2■□□□□ 0.82
CLN3-259ENST00000637551 CNTNAP2Q9UHC6 1331 aa20.2■□□□□ 0.82
CLN3-259ENST00000637551 TCHHQ07283 1943 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 LINC01553A4QN01 128 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 LRRIQ4A6NIV6 560 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 RB1P06400 928 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 HOXA11P31270 313 aaPredicted RBP20.19■□□□□ 0.82
CLN3-259ENST00000637551 ZNF131P52739 623 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 CEBPZQ03701 1054 aaKnown RBP20.19■□□□□ 0.82
CLN3-259ENST00000637551 MAPK7Q13164 816 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 KARSQ15046 597 aaKnown RBP20.19■□□□□ 0.82
CLN3-259ENST00000637551 MAPK6Q16659 721 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 AMHR2Q16671 573 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 NAALADL2Q58DX5 795 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 TWF2Q6IBS0 349 aaKnown RBP20.19■□□□□ 0.82
CLN3-259ENST00000637551 ECHDC2Q86YB7 292 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 EPSTI1Q96J88 318 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 RUSC1Q9BVN2 902 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 PLVAPQ9BX97 442 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 CCDC113Q9H0I3 377 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 TMEM134Q9H6X4 195 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 GPRC5CQ9NQ84 441 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 LMCD1Q9NZU5 365 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 ARHGAP28Q9P2N2 729 aa20.19■□□□□ 0.82
CLN3-259ENST00000637551 C5orf67F2Z3F1 127 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 INO80B-WBP1J3KQ70 363 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 TSPAN1O60635 241 aa20.18■□□□□ 0.82
CLN3-259ENST00000637551 HIP1RO75146 1068 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms