RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 NELFBQ8WX92 580 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 IFT122Q9HBG6 1241 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 ZMYM2Q9UBW7 1377 aa22.65■■□□□ 1.22
CLN3-245ENST00000636172 A0A087WZ62 844 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 KIF20AO95235 890 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 CAVIN2O95810 425 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 CAPN2P17655 700 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 ERCC5P28715 1186 aaPredicted RBP22.64■■□□□ 1.21
CLN3-245ENST00000636172 PTENP60484 403 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 PTK7Q13308 1070 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 KIZQ2M2Z5 673 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 NME8Q8N427 588 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 DHX38Q92620 1227 aaKnown RBP22.64■■□□□ 1.21
CLN3-245ENST00000636172 HVCN1Q96D96 273 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 BPIFA3Q9BQP9 254 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 FDXACB1Q9BRP7 624 aaPredicted RBP22.64■■□□□ 1.21
CLN3-245ENST00000636172 NFKBIZQ9BYH8 718 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 ADAMTS10Q9H324 1103 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 SEMA6BQ9H3T3 888 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 CBX8Q9HC52 389 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 TBX20Q9UMR3 447 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 NOD1Q9Y239 953 aa22.64■■□□□ 1.21
CLN3-245ENST00000636172 SCP2P22307 547 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 PHKA2P46019 1235 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 RGS19P49795 217 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 PMS1P54277 932 aaKnown RBP22.63■■□□□ 1.21
CLN3-245ENST00000636172 STX17P56962 302 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 KNOP1Q1ED39 458 aaKnown RBP22.63■■□□□ 1.21
CLN3-245ENST00000636172 CENPPQ6IPU0 288 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 SLC39A5Q6ZMH5 540 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 RPAINQ86UA6 219 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 ZNF410Q86VK4 478 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 IFNLR1Q8IU57 520 aaPredicted RBP22.63■■□□□ 1.21
CLN3-245ENST00000636172 FAM126BQ8IXS8 530 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 FAM200AQ8TCP9 573 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 NLRP7Q8WX94 980 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 P2RX5Q93086 422 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 CCDC113Q9H0I3 377 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 C2orf40Q9H1Z8 148 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 IKZF4Q9H2S9 585 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 KCTD10Q9H3F6 313 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 RWDD2AQ9UIY3 292 aa22.63■■□□□ 1.21
CLN3-245ENST00000636172 TRIM49BA6NDI0 452 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 CCNE1P24864 410 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 EFNA5P52803 228 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 ATN1P54259 1190 aaPredicted RBP22.62■■□□□ 1.21
CLN3-245ENST00000636172 CDC42EP1Q00587 391 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 MAP4K3Q8IVH8 894 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 ZBTB8OSQ8IWT0 167 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 PAWRQ96IZ0 340 aaKnown RBP22.62■■□□□ 1.21
CLN3-245ENST00000636172 ACCSQ96QU6 501 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 TMEM134Q9H6X4 195 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 MINDY3Q9H8M7 445 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 PHLPP2Q6ZVD8 1323 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 RPLP2P05387 115 aaKnown RBP22.62■■□□□ 1.21
CLN3-245ENST00000636172 ABCD1P33897 745 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 MRPS6P82932 125 aaKnown RBP22.62■■□□□ 1.21
CLN3-245ENST00000636172 MBTD1Q05BQ5 628 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 SNX17Q15036 470 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 IQCB1Q15051 598 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 TRIM71Q2Q1W2 868 aaKnown RBP22.62■■□□□ 1.21
CLN3-245ENST00000636172 ZCWPW2Q504Y3 356 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 RSPH3Q86UC2 560 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 DHX40Q8IX18 779 aaKnown RBP22.62■■□□□ 1.21
CLN3-245ENST00000636172 SCLT1Q96NL6 688 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 C11orf49Q9H6J7 331 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 CDHR5Q9HBB8 845 aa22.62■■□□□ 1.21
CLN3-245ENST00000636172 K7ERI5 159 aa22.61■■□□□ 1.21
CLN3-245ENST00000636172 CD4P01730 458 aa22.61■■□□□ 1.21
CLN3-245ENST00000636172 ANKRD40Q6AI12 368 aa22.61■■□□□ 1.21
CLN3-245ENST00000636172 TTI2Q6NXR4 508 aa22.61■■□□□ 1.21
CLN3-245ENST00000636172 ZNF710Q8N1W2 664 aa22.61■■□□□ 1.21
CLN3-245ENST00000636172 AOPEPQ8N6M6 819 aa22.61■■□□□ 1.21
CLN3-245ENST00000636172 RNF214Q8ND24 703 aa22.61■■□□□ 1.21
CLN3-245ENST00000636172 RBSNQ9H1K0 784 aa22.61■■□□□ 1.21
CLN3-245ENST00000636172 GINS2Q9Y248 185 aa22.61■■□□□ 1.21
CLN3-245ENST00000636172 TGFB1I1O43294 461 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 EDN1P05305 212 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 THPOP40225 353 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 MYL5Q02045 173 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 STRN3Q13033 797 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 C1orf53Q5VUE5 145 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 MROH7Q68CQ1 1323 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 ANKRD33Q7Z3H0 272 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 ENOX1Q8TC92 643 aaKnown RBP22.6■■□□□ 1.21
CLN3-245ENST00000636172 OSMRQ99650 979 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 FZD8Q9H461 694 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 TMEM206Q9H813 350 aa22.6■■□□□ 1.21
CLN3-245ENST00000636172 BICDL2A1A5D9 508 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 INO80B-WBP1J3KQ70 363 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 PQBP1O60828 265 aaKnown RBP22.59■■□□□ 1.21
CLN3-245ENST00000636172 CSDE1O75534 798 aaKnown RBP22.59■■□□□ 1.21
CLN3-245ENST00000636172 CTSHP09668 335 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 IQCF3P0C7M6 154 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 LRRC63Q05C16 580 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 NCAPHQ15003 741 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 MAPK6Q16659 721 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 SRGAP1Q7Z6B7 1085 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 LUZP1Q86V48 1076 aa22.59■■□□□ 1.21
CLN3-245ENST00000636172 SYCP3Q8IZU3 236 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms