RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 CXCL17Q6UXB2 119 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 LMBR1Q8WVP7 490 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 PSPC1Q8WXF1 523 aaKnown RBP15.54■□□□□ 0.08
CLN3-242ENST00000635958 HVCN1Q96D96 273 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 DUSP9Q99956 384 aaKnown RBP15.54■□□□□ 0.08
CLN3-242ENST00000635958 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.54■□□□□ 0.08
CLN3-242ENST00000635958 SUGCTQ9HAC7 445 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 KMT5AQ9NQR1 393 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 PAK6Q9NQU5 681 aaPredicted RBP15.54■□□□□ 0.08
CLN3-242ENST00000635958 SETD4Q9NVD3 440 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 ARHGAP28Q9P2N2 729 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 TRAF3IP3Q9Y228 551 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 PDXKO00764 312 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 SLC16A4O15374 487 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 CABYRO75952 493 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 ZNF18P17022 549 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 IGBP1P78318 339 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 POU5F1BQ06416 359 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 SLC9C1Q4G0N8 1177 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 PPP4R3CPQ6ZMV5 832 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 LRRC71Q8N4P6 559 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 FANCLQ9NW38 375 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 SUCLA2Q9P2R7 463 aaPredicted RBP15.54■□□□□ 0.08
CLN3-242ENST00000635958 EVPLQ92817 2033 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 TRIM49BA6NDI0 452 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 MOXD2PA6NHM9 499 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 CCDC169A6NNP5 214 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 K7ENM7 598 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 CCP110O43303 1012 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 TMOD1P28289 359 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 DMTNQ08495 405 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 KCNA1Q09470 495 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 LAMTOR4Q0VGL1 99 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 PKN2Q16513 984 aaKnown RBP15.53■□□□□ 0.08
CLN3-242ENST00000635958 CEP135Q66GS9 1140 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 SESTD1Q86VW0 696 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 ARRDC4Q8NCT1 418 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 CACTINQ8WUQ7 758 aaKnown RBP15.53■□□□□ 0.08
CLN3-242ENST00000635958 UNC93B1Q9H1C4 597 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 TMEM206Q9H813 350 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 OGFRQ9NZT2 677 aa15.53■□□□□ 0.08
CLN3-242ENST00000635958 GNAT1P11488 350 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 CAPSQ13938 189 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 HIC1Q14526 733 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 NFIL3Q16649 462 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 EDRF1Q3B7T1 1238 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 NBPF20Q3BBV1 942 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 CDKAL1Q5VV42 579 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 NFRKBQ6P4R8 1299 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 FBXO46Q6PJ61 603 aaPredicted RBP15.52■□□□□ 0.08
CLN3-242ENST00000635958 NELFCDQ8IXH7 590 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 ZC3H3Q8IXZ2 948 aaKnown RBP15.52■□□□□ 0.08
CLN3-242ENST00000635958 KIAA0319LQ8IZA0 1049 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 METTL13Q8N6R0 699 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 CCDC150Q8NCX0 1101 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 NOC3LQ8WTT2 800 aaKnown RBP15.52■□□□□ 0.08
CLN3-242ENST00000635958 TMEM174Q8WUU8 243 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 ACCSQ96QU6 501 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 TYW1Q9NV66 732 aaKnown RBP15.52■□□□□ 0.08
CLN3-242ENST00000635958 HDAC6Q9UBN7 1215 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 ADGRA3Q8IWK6 1321 aa15.52■□□□□ 0.08
CLN3-242ENST00000635958 SMIM35A0A1B0GVV1 85 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 TGFB1I1O43294 461 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 CLCN3P51790 818 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 ACLYP53396 1101 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 SNRPFP62306 86 aaKnown RBP15.52■□□□□ 0.07
CLN3-242ENST00000635958 PTPN14Q15678 1187 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 MAP4K3Q8IVH8 894 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 C7orf31Q8N865 590 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 ZBTB10Q96DT7 871 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 TSG101Q99816 390 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 NFKBIZQ9BYH8 718 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 THAP9Q9H5L6 903 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 TMEM134Q9H6X4 195 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 SAMSN1Q9NSI8 373 aaKnown RBP15.52■□□□□ 0.07
CLN3-242ENST00000635958 TBX20Q9UMR3 447 aa15.52■□□□□ 0.07
CLN3-242ENST00000635958 C17orf102A2RUQ5 167 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 DENND3A2RUS2 1198 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 EFNA5P52803 228 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 FAM193AP78312 1265 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 CDC42EP1Q00587 391 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 CDCA2Q69YH5 1023 aaPredicted RBP15.51■□□□□ 0.07
CLN3-242ENST00000635958 IRF2BP1Q8IU81 584 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 CSGALNACT2Q8N6G5 542 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 KIFC3Q9BVG8 833 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 SRRTQ9BXP5 876 aaKnown RBP15.51■□□□□ 0.07
CLN3-242ENST00000635958 GBP3Q9H0R5 595 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 GTF2IRD1Q9UHL9 959 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 GRIN2DO15399 1336 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 ZMYM2Q9UBW7 1377 aa15.51■□□□□ 0.07
CLN3-242ENST00000635958 CCL5P13501 91 aa15.5■□□□□ 0.07
CLN3-242ENST00000635958 FKBP3Q00688 224 aaKnown RBP15.5■□□□□ 0.07
CLN3-242ENST00000635958 TFDP1Q14186 410 aa15.5■□□□□ 0.07
CLN3-242ENST00000635958 MTFR1Q15390 333 aa15.5■□□□□ 0.07
CLN3-242ENST00000635958 TAS1R3Q7RTX0 852 aa15.5■□□□□ 0.07
CLN3-242ENST00000635958 IFNLR1Q8IU57 520 aaPredicted RBP15.5■□□□□ 0.07
CLN3-242ENST00000635958 RHPN2Q8IUC4 686 aa15.5■□□□□ 0.07
CLN3-242ENST00000635958 KSR1Q8IVT5 923 aa15.5■□□□□ 0.07
CLN3-242ENST00000635958 DEPTORQ8TB45 409 aa15.5■□□□□ 0.07
CLN3-242ENST00000635958 GOLGA5Q8TBA6 731 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms