RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 FAM102BQ5T8I3 360 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 PLA2G4FQ68DD2 849 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 CAVIN1Q6NZI2 390 aaKnown RBP14.06□□□□□ -0.16
PNKP-217ENST00000625216 RHPN2Q8IUC4 686 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 TPH2Q8IWU9 490 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 FSIP1Q8NA03 581 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 TCP11Q8WWU5 503 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 RSPH1Q8WYR4 309 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 MRPS27Q92552 414 aaKnown RBP14.06□□□□□ -0.16
PNKP-217ENST00000625216 DYDC2Q96IM9 177 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 UHRF1Q96T88 793 aaPredicted RBP14.06□□□□□ -0.16
PNKP-217ENST00000625216 EIF2AK1Q9BQI3 630 aaKnown RBP14.06□□□□□ -0.16
PNKP-217ENST00000625216 SH2D3AQ9BRG2 576 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 FDXACB1Q9BRP7 624 aaPredicted RBP14.06□□□□□ -0.16
PNKP-217ENST00000625216 TRAIPQ9BWF2 469 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 TMEM117Q9H0C3 514 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 WRAP73Q9P2S5 460 aaPredicted RBP14.06□□□□□ -0.16
PNKP-217ENST00000625216 PCDHB12Q9Y5F1 795 aa14.06□□□□□ -0.16
PNKP-217ENST00000625216 SRPRBQ9Y5M8 271 aaKnown RBP14.06□□□□□ -0.16
PNKP-217ENST00000625216 OR52Z1P0C646 297 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 SKIP12755 728 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 TXKP42681 527 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 UBE3AQ05086 875 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 COL19A1Q14993 1142 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 IL17AQ16552 155 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 PUS10Q3MIT2 529 aaKnown RBP14.05□□□□□ -0.16
PNKP-217ENST00000625216 LEXMQ3ZCV2 418 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 XKR9Q5GH70 373 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 TCEAL5Q5H9L2 206 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 RESP18Q5W5W9 173 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 ECHDC2Q86YB7 292 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 SPPL3Q8TCT6 385 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 PSPC1Q8WXF1 523 aaKnown RBP14.05□□□□□ -0.16
PNKP-217ENST00000625216 PPP2R3CQ969Q6 453 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 PABPC5Q96DU9 382 aaKnown RBP14.05□□□□□ -0.16
PNKP-217ENST00000625216 ZNF668Q96K58 619 aaPredicted RBP14.05□□□□□ -0.16
PNKP-217ENST00000625216 ANKEF1Q9NU02 776 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 COL4A3BPQ9Y5P4 624 aa14.05□□□□□ -0.16
PNKP-217ENST00000625216 FAM237AA0A1B0GTK4 181 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 A0A1B0GVL5 298 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 NR1I2O75469 434 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 ITGB1P05556 798 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 PFKFB1P16118 471 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 IBSPP21815 317 aaPredicted RBP14.04□□□□□ -0.16
PNKP-217ENST00000625216 GATMP50440 423 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 KCNQ1P51787 676 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 CYP4A11Q02928 519 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 CTTNQ14247 550 aaKnown RBP14.04□□□□□ -0.16
PNKP-217ENST00000625216 SPECC1Q5M775 1068 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 SPOUT1Q5T280 376 aaKnown RBP14.04□□□□□ -0.16
PNKP-217ENST00000625216 CCDC73Q6ZRK6 1079 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 SRGAP1Q7Z6B7 1085 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 ABI1Q8IZP0 508 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 ZNF579Q8NAF0 562 aaKnown RBP14.04□□□□□ -0.16
PNKP-217ENST00000625216 KLHL23Q8NBE8 558 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 ENGASEQ8NFI3 743 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 PRPF31Q8WWY3 499 aaKnown RBP14.04□□□□□ -0.16
PNKP-217ENST00000625216 NLRP4Q96MN2 994 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 CSRNP2Q9H175 543 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 ALG13Q9NP73 1137 aaKnown RBP14.04□□□□□ -0.16
PNKP-217ENST00000625216 TYW1Q9NV66 732 aaKnown RBP14.04□□□□□ -0.16
PNKP-217ENST00000625216 HPSEQ9Y251 543 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 REV3LO60673 3130 aa14.04□□□□□ -0.16
PNKP-217ENST00000625216 EVPLQ92817 2033 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 VWA3AA6NCI4 1184 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 CSDE1O75534 798 aaKnown RBP14.03□□□□□ -0.16
PNKP-217ENST00000625216 FGFR1P11362 822 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 LAG3P18627 525 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 FGFR4P22455 802 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 KCNA5P22460 613 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 CMA1P23946 247 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 PRPHP41219 470 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 NDUFA8P51970 172 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 POU5F1BQ06416 359 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 SNW1Q13573 536 aaKnown RBP14.03□□□□□ -0.16
PNKP-217ENST00000625216 MXD4Q14582 209 aaPredicted RBP14.03□□□□□ -0.16
PNKP-217ENST00000625216 PCBP1Q15365 356 aaKnown RBP eCLIP14.03□□□□□ -0.16
PNKP-217ENST00000625216 ARL6IP4Q66PJ3 421 aaKnown RBP14.03□□□□□ -0.16
PNKP-217ENST00000625216 USP49Q70CQ1 688 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 CATSPER4Q7RTX7 472 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 ZNF598Q86UK7 904 aaKnown RBP14.03□□□□□ -0.16
PNKP-217ENST00000625216 CASD1Q96PB1 797 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 ANP32EQ9BTT0 268 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 GZF1Q9H116 711 aaPredicted RBP14.03□□□□□ -0.16
PNKP-217ENST00000625216 IFT122Q9HBG6 1241 aa14.03□□□□□ -0.16
PNKP-217ENST00000625216 CARNS1A5YM72 827 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 LAD1O00515 517 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 ZBTB39O15060 712 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 ZNF623O75123 536 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 DGAT1O75907 488 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 PHKA2P46019 1235 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 RAB27AP51159 221 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 FAM160A1Q05DH4 1040 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 LAMTOR4Q0VGL1 99 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 CAMK1Q14012 370 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 EMC2Q15006 297 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 CTC1Q2NKJ3 1217 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 PDE12Q6L8Q7 609 aaKnown RBP14.02□□□□□ -0.17
PNKP-217ENST00000625216 KSR1Q8IVT5 923 aa14.02□□□□□ -0.17
PNKP-217ENST00000625216 FMR1NBQ8N0W7 255 aaPredicted RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms