RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 APBA3O96018 575 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 PORP16435 677 aaPredicted RBP8.49□□□□□ -1.05
VPS11-209ENST00000622309 MARK3P27448 753 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 POLR2FP61218 127 aaKnown RBP8.49□□□□□ -1.05
VPS11-209ENST00000622309 SLC34A1Q06495 639 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 GPR162Q16538 588 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 SH3D19Q5HYK7 790 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 ZNF658Q5TYW1 1059 aaPredicted RBP8.49□□□□□ -1.05
VPS11-209ENST00000622309 TTC39BQ5VTQ0 682 aaPredicted RBP8.49□□□□□ -1.05
VPS11-209ENST00000622309 RNF43Q68DV7 783 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 KSR2Q6VAB6 950 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 MICU3Q86XE3 530 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 COL23A1Q86Y22 540 aaPredicted RBP8.49□□□□□ -1.05
VPS11-209ENST00000622309 PALB2Q86YC2 1186 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 DQX1Q8TE96 717 aaKnown RBP8.49□□□□□ -1.05
VPS11-209ENST00000622309 RNF25Q96BH1 459 aaPredicted RBP8.49□□□□□ -1.05
VPS11-209ENST00000622309 ERP27Q96DN0 273 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 DNAJC1Q96KC8 554 aaKnown RBP8.49□□□□□ -1.05
VPS11-209ENST00000622309 AP1M1Q9BXS5 423 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 SLC26A6Q9BXS9 759 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 DDX47Q9H0S4 455 aaKnown RBP8.49□□□□□ -1.05
VPS11-209ENST00000622309 SLC52A2Q9HAB3 445 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 GINM1Q9NU53 330 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 ARHGAP20Q9P2F6 1191 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 TSC22D4Q9Y3Q8 395 aa8.49□□□□□ -1.05
VPS11-209ENST00000622309 GOLGA8AA7E2F4 631 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 EIF3FO00303 357 aaPredicted RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 BIRC5O15392 142 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 MAGEB3O15480 346 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 CABP4P57796 275 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 IGBP1P78318 339 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 SSRP1Q08945 709 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 DCTN2Q13561 401 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 TTLL12Q14166 644 aaPredicted RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 RPS6KA1Q15418 735 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 KHDC1Q4VXA5 237 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 TDRD12Q587J7 1177 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 TRIM67Q6ZTA4 783 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 C7orf57Q8NEG2 295 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 WASF1Q92558 559 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 SYMPKQ92797 1274 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 TTYH3Q9C0H2 523 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 KCNK9Q9NPC2 374 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 CLIC5Q9NZA1 410 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 LRRC37A3O60309 1634 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 A0A087X0B3 334 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 KRIT1O00522 736 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 PJA2O43164 708 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 KCNQ2O43526 872 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 ATP9BO43861 1147 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 RANBP6O60518 1105 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 B3GALNT1O75752 331 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 RGS2P41220 211 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 PRCPP42785 496 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 SLCO1A2P46721 670 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 NSUN2Q08J23 767 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS11-209ENST00000622309 AP1B1Q10567 949 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 CLPPQ16740 277 aaPredicted RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 LRRC8BQ6P9F7 803 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 IRF2BP1Q8IU81 584 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 IFNL2Q8IZJ0 200 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 CHCHD4Q8N4Q1 142 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 ANKRD42Q8N9B4 389 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 CFAP61Q8NHU2 1237 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 DTX3LQ8TDB6 740 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 IRGQQ8WZA9 623 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 GFM2Q969S9 779 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 LRRC37BQ96QE4 947 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 HAUS7Q99871 368 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 LBHD1Q9BQE6 289 aaPredicted RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 MYLK2Q9H1R3 596 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 DHX36Q9H2U1 1008 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 NDUFA13Q9P0J0 144 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 DBNLQ9UJU6 430 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 PLAGL2Q9UPG8 496 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 TDRKHQ9Y2W6 561 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 GRM8O00222 908 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 ECE2O60344 883 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 PABPC4LP0CB38 370 aaKnown RBP8.48□□□□□ -1.05
VPS11-209ENST00000622309 PMS2P54278 862 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 INAQ16352 499 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 SPDYCQ5MJ68 293 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 C3orf67Q6ZVT6 689 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 ATP6V0A1Q93050 837 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 SLC39A3Q9BRY0 314 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 CUEDC2Q9H467 287 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 PTTG2Q9NZH5 202 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 AMACRQ9UHK6 382 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 GDAQ9Y2T3 454 aa8.48□□□□□ -1.05
VPS11-209ENST00000622309 MEGF6O75095 1541 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 A0A1W2PQJ5 194 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 DDX58O95786 925 aaKnown RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 HALP42357 657 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 SLC1A4P43007 532 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 GFPT1Q06210 699 aaPredicted RBP8.47□□□□□ -1.05
VPS11-209ENST00000622309 TMC4Q7Z404 712 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 ECHDC2Q86YB7 292 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 SAMD3Q8N6K7 520 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 SNX27Q96L92 541 aa8.47□□□□□ -1.05
VPS11-209ENST00000622309 POLR3CQ9BUI4 534 aaPredicted RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms