RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 KYNUQ16719 465 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 IRF2BP2Q7Z5L9 587 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 ANAPC7Q9UJX3 599 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 TMEM120BA0PK00 339 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 F5H6K3 240 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 CYP26A1O43174 497 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 POLR2MP0CAP2 368 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 KLRC3Q07444 240 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 USP37Q86T82 979 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 ZNF564Q8TBZ8 553 aaPredicted RBP13.54□□□□□ -0.24
LIG1-221ENST00000613670 ARHGEF26Q96DR7 871 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 C9orf72Q96LT7 481 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 NACC1Q96RE7 527 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 TGS1Q96RS0 853 aaKnown RBP13.54□□□□□ -0.24
LIG1-221ENST00000613670 FNBP1Q96RU3 617 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 FAM129AQ9BZQ8 928 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 APEX2Q9UBZ4 518 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 NR2E1Q9Y466 385 aa13.54□□□□□ -0.24
LIG1-221ENST00000613670 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.53□□□□□ -0.24
LIG1-221ENST00000613670 DNM1LO00429 736 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 SPAG7O75391 227 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 SERPINB2P05120 415 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 TMEM253P0C7T8 217 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 BMP3P12645 472 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 CDC25CP30307 473 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 MXRA7P84157 204 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 ASTE1Q2TB18 679 aaPredicted RBP13.53□□□□□ -0.24
LIG1-221ENST00000613670 SYDE2Q5VT97 1194 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 PPP1R18Q6NYC8 613 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 SCFD2Q8WU76 684 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 SLC20A1Q8WUM9 679 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 SLC35C1Q96A29 364 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 SPDL1Q96EA4 605 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 OSBPL7Q9BZF2 842 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 TTC7AQ9ULT0 858 aaPredicted RBP13.53□□□□□ -0.24
LIG1-221ENST00000613670 STK24Q9Y6E0 443 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 KCPQ6ZWJ8 1503 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 RPA1P27694 616 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 SSTR3P32745 418 aaPredicted RBP13.53□□□□□ -0.24
LIG1-221ENST00000613670 IL9RQ01113 521 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 P3H4Q92791 437 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 STAMBPL1Q96FJ0 436 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 TCHPQ9BT92 498 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 IQCGQ9H095 443 aaKnown RBP13.53□□□□□ -0.24
LIG1-221ENST00000613670 CARD9Q9H257 536 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 SCN11AQ9UI33 1791 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 M0R2N6 131 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 IGF2BP3O00425 579 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIG1-221ENST00000613670 ZBTB39O15060 712 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 PHF2O75151 1096 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 UBOX5O94941 541 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 AGTP01019 485 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 TNNI1P19237 187 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 ARHGEF18Q6ZSZ5 1173 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 ELMO3Q96BJ8 720 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 TAS2R14Q9NYV8 317 aa13.53□□□□□ -0.24
LIG1-221ENST00000613670 NWD2Q9ULI1 1742 aa13.52□□□□□ -0.24
LIG1-221ENST00000613670 RASA4BC9J798 803 aa13.52□□□□□ -0.24
LIG1-221ENST00000613670 RASA4O43374 803 aa13.52□□□□□ -0.24
LIG1-221ENST00000613670 KRT17Q04695 432 aa13.52□□□□□ -0.24
LIG1-221ENST00000613670 PLCB4Q15147 1175 aa13.52□□□□□ -0.24
LIG1-221ENST00000613670 WDR44Q5JSH3 913 aa13.52□□□□□ -0.24
LIG1-221ENST00000613670 ARHGAP27Q6ZUM4 889 aa13.52□□□□□ -0.24
LIG1-221ENST00000613670 LMNTD2Q8IXW0 634 aa13.52□□□□□ -0.24
LIG1-221ENST00000613670 RBM46Q8TBY0 533 aaKnown RBP13.52□□□□□ -0.24
LIG1-221ENST00000613670 TATDN2Q93075 761 aa13.52□□□□□ -0.24
LIG1-221ENST00000613670 FAM20AQ96MK3 541 aa13.52□□□□□ -0.24
LIG1-221ENST00000613670 DIS3Q9Y2L1 958 aaKnown RBP13.52□□□□□ -0.24
LIG1-221ENST00000613670 USP15Q9Y4E8 981 aaPredicted RBP13.52□□□□□ -0.24
LIG1-221ENST00000613670 EYA4O95677 639 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 GH2P01242 217 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 TRAF1Q13077 416 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 AP3B2Q13367 1082 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 EPC2Q52LR7 807 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 XKR9Q5GH70 373 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 SYT2Q8N9I0 419 aaPredicted RBP13.52□□□□□ -0.25
LIG1-221ENST00000613670 LRRC8CQ8TDW0 803 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 MCUR1Q96AQ8 359 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 HAUS1Q96CS2 278 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 TEKT3Q9BXF9 490 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 PITPNM2Q9BZ72 1349 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 EXOC1LA0A1B0GW35 172 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 CA4P22748 312 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 MFAP3P55082 362 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 DPH6Q7L8W6 267 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 YTHDF3Q7Z739 585 aaKnown RBP13.52□□□□□ -0.25
LIG1-221ENST00000613670 ATG4AQ8WYN0 398 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 PIK3R5Q8WYR1 880 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 KRT35Q92764 455 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 NT5C1BQ96P26 610 aa13.52□□□□□ -0.25
LIG1-221ENST00000613670 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.52□□□□□ -0.25
LIG1-221ENST00000613670 BAZ2AQ9UIF9 1905 aaKnown RBP13.51□□□□□ -0.25
LIG1-221ENST00000613670 SMARCA1P28370 1054 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 PEX3P56589 373 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 C2CD6Q53TS8 623 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 VPS52Q8N1B4 723 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 SAAL1Q96ER3 474 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 YIPF3Q9GZM5 350 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 BCAS3Q9H6U6 928 aa13.51□□□□□ -0.25
LIG1-221ENST00000613670 KIF1AQ12756 1690 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms