RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GIT2Q14161 759 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 IQUBQ8NA54 791 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 DHX58Q96C10 678 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 LRCH3Q96II8 777 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 PBX4Q9BYU1 374 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 CUEDC2Q9H467 287 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 CHST12Q9NRB3 414 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 AGPAT5Q9NUQ2 364 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 KCNH3Q9ULD8 1083 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 C9IYK1 514 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 ERLIN2O94905 339 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 GJB5O95377 273 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 KRT18P05783 430 aaKnown RBP18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 PLS3P13797 630 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 PFKFB1P16118 471 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 HOXA11P31270 313 aaPredicted RBP18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 PBX2P40425 430 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 RABGGTBP53611 331 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 DMP1Q13316 513 aaPredicted RBP18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 SLC24A5Q71RS6 500 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 ZBTB8OSQ8IWT0 167 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 CRIPAKQ8N1N5 446 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 DEPTORQ8TB45 409 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 KIFC3Q9BVG8 833 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 C2orf40Q9H1Z8 148 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 C1orf112Q9NSG2 853 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 PIN4Q9Y237 131 aaKnown RBP18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 MYH11P35749 1972 aa18.28■□□□□ 0.52
CCDC28A-202ENST00000611852 GBF1Q92538 1859 aa18.27■□□□□ 0.52
CCDC28A-202ENST00000611852 A0A1B0GVL5 298 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 A0A1W2PQ27 194 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 A0A1W2PQ64 194 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 A0A1W2PQD8 194 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 MYMKA6NI61 221 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 CCDC169A6NNP5 214 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 TSPAN1O60635 241 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 UPP2O95045 317 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 SARSP49591 514 aaKnown RBP18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 FXR1P51114 621 aaKnown RBP eCLIP18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 ZNF131P52739 623 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 AMHR2Q16671 573 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 FAM117BQ6P1L5 589 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 DYMQ7RTS9 669 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 DDX12PQ92771 950 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 NTPCRQ9BSD7 190 aaKnown RBP18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 CCDC113Q9H0I3 377 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 FZD8Q9H461 694 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 KBTBD4Q9NVX7 518 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 DACT1Q9NYF0 836 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 HPSEQ9Y251 543 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 PCDHA11Q9Y5I1 949 aa18.27■□□□□ 0.51
CCDC28A-202ENST00000611852 FAM237AA0A1B0GTK4 181 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 EFNA5P52803 228 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 FAM189BP81408 668 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 FAM187BQ17R55 369 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 PPP4R3CPQ6ZMV5 832 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 SPIRE2Q8WWL2 714 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 STAMQ92783 540 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 PYM1Q9BRP8 204 aaKnown RBP18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 ZBED2Q9BTP6 218 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 TNMDQ9H2S6 317 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 KMT5AQ9NQR1 393 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 LARSQ9P2J5 1176 aaKnown RBP18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 ARHGAP28Q9P2N2 729 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 KCNG1Q9UIX4 513 aa18.26■□□□□ 0.51
CCDC28A-202ENST00000611852 B4GALT5O43286 388 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 TLL1O43897 1013 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 TBCAO75347 108 aaKnown RBP18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 FAM13AO94988 1023 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 MYOGP15173 224 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 DNAJB2P25686 324 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 RAB30Q15771 203 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 MAPK6Q16659 721 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 TPRNQ4KMQ1 711 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 TWF2Q6IBS0 349 aaKnown RBP18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 NPAS4Q8IUM7 802 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 DNAJC19Q96DA6 116 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 PRIMPOLQ96LW4 560 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 RAD9AQ99638 391 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 TRAIPQ9BWF2 469 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 PARVGQ9HBI0 331 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 PRMT7Q9NVM4 692 aaPredicted RBP18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 MSRAQ9UJ68 235 aa18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 YBX2Q9Y2T7 364 aaKnown RBP18.25■□□□□ 0.51
CCDC28A-202ENST00000611852 A0A0U1RQF3 1178 aa18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 SLC16A4O15374 487 aa18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 ARF4P18085 180 aaPredicted RBP18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 AXLP30530 894 aa18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 NDUFA8P51970 172 aa18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 SMTNP53814 917 aa18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 HTRA4P83105 476 aaPredicted RBP18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 NCBP1Q09161 790 aaKnown RBP18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 MYCT1Q8N699 235 aa18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 FSIP1Q8NA03 581 aa18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 MRPS27Q92552 414 aaKnown RBP18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 MAGEF1Q9HAY2 307 aa18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 INSL6Q9Y581 213 aa18.24■□□□□ 0.51
CCDC28A-202ENST00000611852 TTLL13PA6NNM8 815 aa18.23■□□□□ 0.51
CCDC28A-202ENST00000611852 K7ERI5 159 aa18.23■□□□□ 0.51
CCDC28A-202ENST00000611852 ACKR2O00590 384 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms