RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 GPRC5CQ9NQ84 441 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 METTL5Q9NRN9 209 aaKnown RBP5.85□□□□□ -1.47
LINC00540-201ENST00000611481 GINM1Q9NU53 330 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 PKD1L2Q7Z442 2459 aa5.84□□□□□ -1.47
LINC00540-201ENST00000611481 ANKRD34BA5PLL1 514 aa5.84□□□□□ -1.47
LINC00540-201ENST00000611481 GJA8P48165 433 aa5.84□□□□□ -1.47
LINC00540-201ENST00000611481 FANCCQ00597 558 aa5.84□□□□□ -1.47
LINC00540-201ENST00000611481 SCRN1Q12765 414 aa5.84□□□□□ -1.47
LINC00540-201ENST00000611481 ADAM9Q13443 819 aa5.84□□□□□ -1.47
LINC00540-201ENST00000611481 TCIRG1Q13488 830 aa5.84□□□□□ -1.47
LINC00540-201ENST00000611481 ZNF530Q6P9A1 599 aaPredicted RBP5.84□□□□□ -1.47
LINC00540-201ENST00000611481 RIOX2Q8IUF8 465 aa5.84□□□□□ -1.47
LINC00540-201ENST00000611481 CRACR2BQ8N4Y2 399 aaPredicted RBP5.84□□□□□ -1.47
LINC00540-201ENST00000611481 SPATA32Q96LK8 384 aa5.84□□□□□ -1.47
LINC00540-201ENST00000611481 KDM3BQ7LBC6 1761 aa5.84□□□□□ -1.47
LINC00540-201ENST00000611481 PPM1GO15355 546 aaPredicted RBP5.83□□□□□ -1.48
LINC00540-201ENST00000611481 GPR42O15529 346 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 CYP7B1O75881 506 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 CAMTA2O94983 1202 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 KCNH1O95259 989 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 AMHP03971 560 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 FOSL2P15408 326 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 IL13P35225 146 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 GIPRP48546 466 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 EPHB4P54760 987 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 PPP2CBP62714 309 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 PPP2CAP67775 309 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 SLC39A6Q13433 755 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 ARHGEF6Q15052 776 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 CR1LQ2VPA4 569 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 ZNF513Q8N8E2 541 aaPredicted RBP5.83□□□□□ -1.48
LINC00540-201ENST00000611481 DPF2Q92785 391 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 MBD6Q96DN6 1003 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 MRRFQ96E11 262 aaKnown RBP5.83□□□□□ -1.48
LINC00540-201ENST00000611481 YTHDC1Q96MU7 727 aaKnown RBP5.83□□□□□ -1.48
LINC00540-201ENST00000611481 UHRF1Q96T88 793 aaPredicted RBP5.83□□□□□ -1.48
LINC00540-201ENST00000611481 JADE2Q9NQC1 790 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 SCAF8Q9UPN6 1271 aaKnown RBP5.83□□□□□ -1.48
LINC00540-201ENST00000611481 EMC9Q9Y3B6 208 aa5.83□□□□□ -1.48
LINC00540-201ENST00000611481 MANSC4A6NHS7 340 aaPredicted RBP5.82□□□□□ -1.48
LINC00540-201ENST00000611481 YDJCA8MPS7 323 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 PSMD14O00487 310 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 GJB1P08034 283 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 SOX9P48436 509 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 RPL11P62913 178 aaKnown RBP5.82□□□□□ -1.48
LINC00540-201ENST00000611481 INF2Q27J81 1249 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 PLEKHO1Q53GL0 409 aaPredicted RBP5.82□□□□□ -1.48
LINC00540-201ENST00000611481 IQCEQ6IPM2 695 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 ZNF585AQ6P3V2 769 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 PKN3Q6P5Z2 889 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 ARHGEF18Q6ZSZ5 1173 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 PALM2Q8IXS6 379 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 USP38Q8NB14 1042 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 IGDCC4Q8TDY8 1250 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 CLIC6Q96NY7 704 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 BACH2Q9BYV9 841 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 VPS33BQ9H267 617 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 APEX2Q9UBZ4 518 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 DDX41Q9UJV9 622 aaKnown RBP5.82□□□□□ -1.48
LINC00540-201ENST00000611481 TCAF1Q9Y4C2 921 aa5.82□□□□□ -1.48
LINC00540-201ENST00000611481 KIF24Q5T7B8 1368 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 NOP56O00567 594 aaKnown RBP5.81□□□□□ -1.48
LINC00540-201ENST00000611481 STARD3NLO95772 234 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 NAT2P11245 290 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 CCL5P13501 91 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 FPR2P25090 351 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 SELENOPP49908 381 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 INHBEP58166 350 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 RACK1P63244 317 aaKnown RBP5.81□□□□□ -1.48
LINC00540-201ENST00000611481 PRKG1Q13976 671 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 PPP2R5EQ16537 467 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 C1orf141Q5JVX7 400 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 TMEM31Q5JXX7 168 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 KIAA1211LQ6NV74 962 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 BVESQ8NE79 360 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 SUPT20HQ8NEM7 779 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 U2AF1L4Q8WU68 220 aaKnown RBP5.81□□□□□ -1.48
LINC00540-201ENST00000611481 RPGRQ92834 1020 aaKnown RBP5.81□□□□□ -1.48
LINC00540-201ENST00000611481 APBA2Q99767 749 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 TMX4Q9H1E5 349 aaPredicted RBP5.81□□□□□ -1.48
LINC00540-201ENST00000611481 PCED1AQ9H1Q7 454 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 SEMA4AQ9H3S1 761 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 CYP26B1Q9NR63 512 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 KIAA1522Q9P206 1035 aaPredicted RBP5.81□□□□□ -1.48
LINC00540-201ENST00000611481 EFR3BQ9Y2G0 817 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 TIMM13Q9Y5L4 95 aaPredicted RBP5.81□□□□□ -1.48
LINC00540-201ENST00000611481 X6R8D5 127 aa5.81□□□□□ -1.48
LINC00540-201ENST00000611481 RAB3GAP2Q9H2M9 1393 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 ALPK3Q96L96 1907 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 CRB2Q5IJ48 1285 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 SLFN13Q68D06 897 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 OTUD7BQ6GQQ9 843 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 VHLLQ6RSH7 139 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 CEP68Q76N32 757 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 KBTBD2Q8IY47 623 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 Q8N1Y9 231 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 TRMT2BQ96GJ1 504 aaKnown RBP5.8□□□□□ -1.48
LINC00540-201ENST00000611481 TOE1Q96GM8 510 aaKnown RBP5.8□□□□□ -1.48
LINC00540-201ENST00000611481 DRC1Q96MC2 740 aa5.8□□□□□ -1.48
LINC00540-201ENST00000611481 WRNIP1Q96S55 665 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms