RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 C2CD4DB7Z1M9 353 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 GAS7O60861 476 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 ZNF623O75123 536 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 ZC3H11AO75152 810 aaKnown RBP eCLIP7.08□□□□□ -1.287e-6■■■■■ 33.7
CUX1-220ENST00000607092 BRD1O95696 1058 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 AOC1P19801 751 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 PHKA2P46019 1235 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 ID4P47928 161 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 METAP2P50579 478 aaKnown RBP eCLIP7.08□□□□□ -1.283e-6■■■■□ 24.7
CUX1-220ENST00000607092 GPC3P51654 580 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 CLCN3P51790 818 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 CREMQ03060 361 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 TDGQ13569 410 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 TSGA10IPQ3SY00 556 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 PRR16Q569H4 304 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 NOMO2Q5JPE7 1267 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 RARS2Q5T160 578 aaKnown RBP7.08□□□□□ -1.28
CUX1-220ENST00000607092 JAKMIP3Q5VZ66 844 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 TWF2Q6IBS0 349 aaKnown RBP7.08□□□□□ -1.28
CUX1-220ENST00000607092 GPR149Q86SP6 731 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 ZNF598Q86UK7 904 aaKnown RBP7.08□□□□□ -1.28
CUX1-220ENST00000607092 VPS52Q8N1B4 723 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 LINC01465Q8N7H1 131 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 CMASQ8NFW8 434 aaPredicted RBP7.08□□□□□ -1.28
CUX1-220ENST00000607092 HELQQ8TDG4 1101 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 HDAC7Q8WUI4 952 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 CRYGNQ8WXF5 182 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 DDX27Q96GQ7 796 aaKnown RBP7.08□□□□□ -1.28
CUX1-220ENST00000607092 IGSF21Q96ID5 467 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 PHOX2BQ99453 314 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 TMEM175Q9BSA9 504 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 TEKT3Q9BXF9 490 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 ZBP1Q9H171 429 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 FAM86C1Q9NVL1 165 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 TAF6LQ9Y6J9 622 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 CACNA1BQ00975 2339 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 FNDC1Q4ZHG4 1894 aaPredicted RBP7.08□□□□□ -1.28
CUX1-220ENST00000607092 KIAA1671Q9BY89 1806 aa7.08□□□□□ -1.28
CUX1-220ENST00000607092 OTOGLQ3ZCN5 2332 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 KMT2EQ8IZD2 1858 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 PLXNA4Q9HCM2 1894 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 KLF18A0A0U1RQI7 1052 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 GAS2O43903 313 aaKnown RBP7.07□□□□□ -1.28
CUX1-220ENST00000607092 ALDH2P05091 517 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 URODP06132 367 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 ADH1AP07327 375 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 ATP4AP20648 1035 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 SDHBP21912 280 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 KLRC2P26717 231 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 RBM10P98175 930 aaKnown RBP7.07□□□□□ -1.28
CUX1-220ENST00000607092 PRKCEQ02156 737 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 FUT2Q10981 343 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 CLLU1OSQ5K130 101 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 LRCH2Q5VUJ6 765 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 TYW1BQ6NUM6 668 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 LRRC55Q6ZSA7 311 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 CATSPER4Q7RTX7 472 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 CCDC105Q8IYK2 499 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 GPR65Q8IYL9 337 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 TRIM22Q8IYM9 498 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 HACE1Q8IYU2 909 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 FLCNQ8NFG4 579 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 SLC7A3Q8WY07 619 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 PGBD1Q96JS3 809 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 FAM193BQ96PV7 902 aaPredicted RBP7.07□□□□□ -1.28
CUX1-220ENST00000607092 APOL5Q9BWW9 433 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 RNF26Q9BY78 433 aaPredicted RBP7.07□□□□□ -1.28
CUX1-220ENST00000607092 SH3GLB2Q9NR46 395 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.07□□□□□ -1.28
CUX1-220ENST00000607092 MRPL17Q9NRX2 175 aaKnown RBP7.07□□□□□ -1.28
CUX1-220ENST00000607092 WNT16Q9UBV4 365 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 NAP1L2Q9ULW6 460 aaPredicted RBP7.07□□□□□ -1.28
CUX1-220ENST00000607092 PIN4Q9Y237 131 aaKnown RBP7.07□□□□□ -1.28
CUX1-220ENST00000607092 ZFP37Q9Y6Q3 630 aaPredicted RBP7.07□□□□□ -1.28
CUX1-220ENST00000607092 CHD6Q8TD26 2715 aa7.07□□□□□ -1.28
CUX1-220ENST00000607092 MYH9P35579 1960 aaKnown RBP7.06□□□□□ -1.28
CUX1-220ENST00000607092 ASAP2O43150 1006 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 PRPF3O43395 683 aaKnown RBP7.06□□□□□ -1.28
CUX1-220ENST00000607092 SP100P23497 879 aaPredicted RBP7.06□□□□□ -1.28
CUX1-220ENST00000607092 EXOSC10Q01780 885 aaKnown RBP7.06□□□□□ -1.28
CUX1-220ENST00000607092 PTPN14Q15678 1187 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 LETM2Q2VYF4 491 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 GALNT17Q6IS24 598 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 CPLX2Q6PUV4 134 aaKnown RBP7.06□□□□□ -1.28
CUX1-220ENST00000607092 MOXD1Q6UVY6 613 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 ASCL5Q7RTU5 278 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 MIER3Q7Z3K6 550 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 SRGAP1Q7Z6B7 1085 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 RAB11FIP4Q86YS3 637 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 ADSSL1Q8N142 457 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 FBXL16Q8N461 479 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 LRRC71Q8N4P6 559 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 TMEM105Q8N8V8 129 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 DTWD2Q8NBA8 298 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 KCNG4Q8TDN1 519 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 CCDC51Q96ER9 411 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 SHDQ96IW2 340 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 PPP1R16BQ96T49 567 aa7.06□□□□□ -1.28
CUX1-220ENST00000607092 NAP1L4Q99733 375 aaKnown RBP7.06□□□□□ -1.28
CUX1-220ENST00000607092 NIFKQ9BYG3 293 aaKnown RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms