RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 DGKIO75912 1065 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 UPP2O95045 317 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 SFPQP23246 707 aaKnown RBP eCLIP21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 MCM6Q14566 821 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 UBXN11Q5T124 520 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 NPAS4Q8IUM7 802 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 DEFB123Q8N688 67 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 CALML4Q96GE6 196 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 ZNF576Q9H609 170 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 CHST12Q9NRB3 414 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 C1orf112Q9NSG2 853 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 PCDHA7Q9UN72 937 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 XIRP2A4UGR9 3374 aa21.61■■□□□ 1.05
SHKBP1-221ENST00000599833 COL4A4P53420 1690 aaPredicted RBP21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 NPHP3-ACAD11A0A0J9YXS1 232 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 LINC01553A4QN01 128 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 TTLL13PA6NNM8 815 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 CUTAO60888 179 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 NAMPTP43490 491 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 PHKA2P46019 1235 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 GATMP50440 423 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 GRIN2CQ14957 1233 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 E2F4Q16254 413 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 KCNG4Q8TDN1 519 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 KIFAP3Q92845 792 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 KIFC3Q9BVG8 833 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 FZD8Q9H461 694 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 INSL6Q9Y581 213 aa21.6■■□□□ 1.05
SHKBP1-221ENST00000599833 EPOPA6NHQ4 379 aa21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 TFDP1Q14186 410 aa21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 ZNF697Q5TEC3 545 aa21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 PPP4R3CPQ6ZMV5 832 aa21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 CATSPER4Q7RTX7 472 aa21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 ECHDC2Q86YB7 292 aa21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 LEO1Q8WVC0 666 aaPredicted RBP21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 CDK5RAP3Q96JB5 506 aa21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 ELAC1Q9H777 363 aaKnown RBP21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 KCND2Q9NZV8 630 aa21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 CFAP45Q9UL16 551 aa21.59■■□□□ 1.05
SHKBP1-221ENST00000599833 A0A0U1RQF3 1178 aa21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 DENND3A2RUS2 1198 aa21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 B4GALT5O43286 388 aa21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 SLC34A2O95436 690 aa21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 PCBP1Q15365 356 aaKnown RBP eCLIP21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 FAM187BQ17R55 369 aa21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 TAS1R3Q7RTX0 852 aa21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 LARP4BQ92615 738 aaKnown RBP21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 FAM161BQ96MY7 647 aa21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 FIZ1Q96SL8 496 aa21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 TIPINQ9BVW5 301 aa21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 PIN4Q9Y237 131 aaKnown RBP21.58■■□□□ 1.05
SHKBP1-221ENST00000599833 UNC80Q8N2C7 3258 aa21.58■■□□□ 1.04
SHKBP1-221ENST00000599833 ATG2AQ2TAZ0 1938 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 LRRIQ4A6NIV6 560 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 ARF4P18085 180 aaPredicted RBP21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 NPTX2P47972 431 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 ZNF131P52739 623 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 CACNB1Q02641 598 aaPredicted RBP21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 PPP2R2DQ66LE6 453 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 REEP2Q9BRK0 252 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 ZBED2Q9BTP6 218 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 SLC28A3Q9HAS3 691 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 TMEM161AQ9NX61 479 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 ARHGAP28Q9P2N2 729 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 STK17AQ9UEE5 414 aa21.57■■□□□ 1.04
SHKBP1-221ENST00000599833 MEIS3P2A8K0S8 358 aa21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 SFI1A8K8P3 1242 aa21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 INO80B-WBP1J3KQ70 363 aa21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 SSBP05455 408 aaKnown RBP eCLIP21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 ZSCAN20P17040 1043 aaPredicted RBP21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 PEX3P56589 373 aa21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 RAD51AP2Q09MP3 1159 aa21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 GIT2Q14161 759 aa21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 RESP18Q5W5W9 173 aa21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 GPBP1Q86WP2 473 aa21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 KCNN1Q92952 543 aa21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 NTPCRQ9BSD7 190 aaKnown RBP21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 USP20Q9Y2K6 914 aa21.56■■□□□ 1.04
SHKBP1-221ENST00000599833 ZNF623O75123 536 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 FGFR1P11362 822 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 ERVK-21P61565 698 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 NUCB2P80303 420 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 CLLU1OSQ5K130 101 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 RRAGBQ5VZM2 374 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 CLP1Q92989 425 aaKnown RBP21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 DNAJC19Q96DA6 116 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 CPB2Q96IY4 423 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 DRC1Q96MC2 740 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 YME1L1Q96TA2 773 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 CDX2Q99626 313 aaPredicted RBP21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 EIF2AQ9BY44 585 aaKnown RBP21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 PANK2Q9BZ23 570 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 C17orf75Q9HAS0 396 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 FAM105AQ9NUU6 356 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 CNTNAP2Q9UHC6 1331 aa21.55■■□□□ 1.04
SHKBP1-221ENST00000599833 A0A1B0GUA9 196 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 MYMKA6NI61 221 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 LPXNO60711 386 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 STAG3L1P0CL83 205 aa21.54■■□□□ 1.04
SHKBP1-221ENST00000599833 PLS3P13797 630 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms