RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 DNAJB4Q9UDY4 337 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 LIMD1Q9UGP4 676 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 SEPT9Q9UHD8 586 aaPredicted RBP9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 LZTS1Q9Y250 596 aa9.76□□□□□ -0.85
SHKBP1-220ENST00000599716 A0A087WZ62 844 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 SOBPA7XYQ1 873 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 WDR64B1ANS9 1081 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 hCG_1984214I3L0E3 225 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 MAGEB2O15479 319 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 TDP2O95551 362 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 SRGAP2BP0DMP2 458 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 SETQ01105 290 aaPredicted RBP9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 DMWDQ09019 674 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 SMC1AQ14683 1233 aaKnown RBP9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 RSPO4Q2I0M5 234 aaPredicted RBP9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 ODR4Q5SWX8 454 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 RNF20Q5VTR2 975 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 PLA2G4FQ68DD2 849 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 TMC5Q6UXY8 1006 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 SMAP1Q8IYB5 467 aaPredicted RBP9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 VPS52Q8N1B4 723 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 ZNF713Q8N859 430 aaPredicted RBP9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 ST13P5Q8NFI4 369 aaPredicted RBP9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 CCDC136Q96JN2 1154 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 JAKMIP1Q96N16 626 aaKnown RBP9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 FDXACB1Q9BRP7 624 aaPredicted RBP9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 SLC26A6Q9BXS9 759 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 ADAM7Q9H2U9 754 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 C6orf50Q9HD87 102 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 NGRNQ9NPE2 291 aaKnown RBP9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 C2orf16Q68DN1 1984 aa9.75□□□□□ -0.85
SHKBP1-220ENST00000599716 A0A0U1RQF3 1178 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 ESYT2A0FGR8 921 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 GAS7O60861 476 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 STBD1O95210 358 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 ADRB1P08588 477 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 TMOD1P28289 359 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 PPM1AP35813 382 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 TBC1D8BQ0IIM8 1120 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 MTMR3Q13615 1198 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 NTRK3Q16288 839 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 LRCH2Q5VUJ6 765 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 TWF2Q6IBS0 349 aaKnown RBP9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 PDE12Q6L8Q7 609 aaKnown RBP9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 CES5AQ6NT32 575 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 ZNF280BQ86YH2 543 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 ZNF579Q8NAF0 562 aaKnown RBP9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 FLCNQ8NFG4 579 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 CASP10Q92851 521 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 TMEM169Q96HH4 297 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 NLRP4Q96MN2 994 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 AIFM3Q96NN9 605 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 CEP89Q96ST8 783 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 ZBP1Q9H171 429 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 NRDE2Q9H7Z3 1164 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 TBC1D13Q9NVG8 400 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 CEP131Q9UPN4 1083 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 SORCS3Q9UPU3 1222 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 PIN4Q9Y237 131 aaKnown RBP9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 SNX14Q9Y5W7 946 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 WDFY3Q8IZQ1 3526 aa9.74□□□□□ -0.85
SHKBP1-220ENST00000599716 DENND4AQ7Z401 1863 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 F8W810 466 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 HOXA2O43364 376 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 PRPF3O43395 683 aaKnown RBP9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 PI15O43692 258 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 HOXB8P17481 243 aaPredicted RBP9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 CIITAP33076 1130 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 PHKA2P46019 1235 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 SLC11A1P49279 550 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 ALDH7A1P49419 539 aaKnown RBP9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 NPEPPSP55786 919 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 TARBP2Q15633 366 aaKnown RBP9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 TPRNQ4KMQ1 711 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 BMP2KLQ5H9B9 411 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 ASTLQ6HA08 431 aaPredicted RBP9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 MIER3Q7Z3K6 550 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 RHPN2Q8IUC4 686 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 TDRD5Q8NAT2 981 aaKnown RBP9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 TBCKQ8TEA7 893 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 RUBCNQ92622 972 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 SLC5A5Q92911 643 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 IGSF21Q96ID5 467 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 FAM167AQ96KS9 214 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 HINFPQ9BQA5 517 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 TEKT3Q9BXF9 490 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 GLT8D2Q9H1C3 349 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 NRBP2Q9NSY0 501 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 DBR1Q9UK59 544 aaKnown RBP9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 NR2E1Q9Y466 385 aa9.73□□□□□ -0.85
SHKBP1-220ENST00000599716 LAMA5O15230 3695 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 DDX11L8A8MPP1 907 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 C2CD2LO14523 706 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 NARSO43776 548 aaKnown RBP9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 OFD1O75665 1012 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 PSMD10O75832 226 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 DDHD2O94830 711 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 GALTP07902 379 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 GNA11P29992 359 aa9.72□□□□□ -0.85
SHKBP1-220ENST00000599716 NLRP5P59047 1200 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms