RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 CCDC169A6NNP5 214 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 SFI1A8K8P3 1242 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 CUTAO60888 179 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 PPP6R2O75170 966 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 ERLIN2O94905 339 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 KRT18P05783 430 aaKnown RBP12.27□□□□□ -0.45
LIG1-211ENST00000596457 STAG3L1P0CL83 205 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 ANP32AP39687 249 aaKnown RBP12.27□□□□□ -0.45
LIG1-211ENST00000596457 ME1P48163 572 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 SARSP49591 514 aaKnown RBP12.27□□□□□ -0.45
LIG1-211ENST00000596457 PTENP60484 403 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 DSC3Q14574 896 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 GRIN2CQ14957 1233 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 TMEM132AQ24JP5 1023 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 LONRF3Q496Y0 759 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 PAN2Q504Q3 1202 aaKnown RBP12.27□□□□□ -0.45
LIG1-211ENST00000596457 RRAGBQ5VZM2 374 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 TWF2Q6IBS0 349 aaKnown RBP12.27□□□□□ -0.45
LIG1-211ENST00000596457 SLC24A5Q71RS6 500 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 GPBP1Q86WP2 473 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 ZBTB8OSQ8IWT0 167 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 PDILTQ8N807 584 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 SYT2Q8N9I0 419 aaPredicted RBP12.27□□□□□ -0.45
LIG1-211ENST00000596457 DEPTORQ8TB45 409 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 LRRC15Q8TF66 581 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 BSNDQ8WZ55 320 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 CPB2Q96IY4 423 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 CCSER1Q9C0I3 900 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 C1orf112Q9NSG2 853 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 MTUS1Q9ULD2 1270 aa12.27□□□□□ -0.45
LIG1-211ENST00000596457 SLC26A4O43511 780 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 ARHGEF15O94989 841 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 GATMP50440 423 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 SLC12A3P55017 1021 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 PEX3P56589 373 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 KRT85P78386 507 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 NCBP1Q09161 790 aaKnown RBP12.26□□□□□ -0.45
LIG1-211ENST00000596457 PPP2R5AQ15172 486 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 ATL3Q6DD88 541 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 C1orf186Q6ZWK4 172 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 NPAS4Q8IUM7 802 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 LARP4BQ92615 738 aaKnown RBP12.26□□□□□ -0.45
LIG1-211ENST00000596457 RAD54LQ92698 747 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 KIFAP3Q92845 792 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 SPATA32Q96LK8 384 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 KIFC3Q9BVG8 833 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 ZHX3Q9H4I2 956 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 BLOC1S4Q9NUP1 217 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 PCDHA7Q9UN72 937 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 ATP6V1DQ9Y5K8 247 aa12.26□□□□□ -0.45
LIG1-211ENST00000596457 NLRC5Q86WI3 1866 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 C9IYK1 514 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 RFXAPO00287 272 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 DDIT3P35638 169 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 STAT6P42226 847 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 NUCB2P80303 420 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 TAP1Q03518 808 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 MBTD1Q05BQ5 628 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 BTG3Q14201 252 aaPredicted RBP12.25□□□□□ -0.45
LIG1-211ENST00000596457 SPRED2Q7Z698 418 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 CDR2LQ86X02 465 aaPredicted RBP12.25□□□□□ -0.45
LIG1-211ENST00000596457 FIBCD1Q8N539 461 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 KCNG4Q8TDN1 519 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 ARNTL2Q8WYA1 636 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 DRC1Q96MC2 740 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 PRDM12Q9H4Q4 367 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 CHST12Q9NRB3 414 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 DACT1Q9NYF0 836 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 TTC3P53804 2025 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 MYO9BQ13459 2157 aa12.25□□□□□ -0.45
LIG1-211ENST00000596457 LINC01553A4QN01 128 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 TBKBP1A7MCY6 615 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 B4GALT5O43286 388 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 TSPAN1O60635 241 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 DGKIO75912 1065 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 FGFR1P11362 822 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 NAMPTP43490 491 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 HTRA4P83105 476 aaPredicted RBP12.24□□□□□ -0.45
LIG1-211ENST00000596457 POU5F1BQ06416 359 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 FNDC1Q4ZHG4 1894 aaPredicted RBP12.24□□□□□ -0.45
LIG1-211ENST00000596457 ARSHQ5FYA8 562 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 TJAP1Q5JTD0 557 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 SPOUT1Q5T280 376 aaKnown RBP12.24□□□□□ -0.45
LIG1-211ENST00000596457 CCDC73Q6ZRK6 1079 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 SV2BQ7L1I2 683 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 DYMQ7RTS9 669 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 ECHDC2Q86YB7 292 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 KCTD17Q8N5Z5 321 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 STAMQ92783 540 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 LPPQ93052 612 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 C2orf40Q9H1Z8 148 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 GDPD2Q9HCC8 539 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 KMT5AQ9NQR1 393 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 AGPAT5Q9NUQ2 364 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 RNF216Q9NWF9 866 aaPredicted RBP12.24□□□□□ -0.45
LIG1-211ENST00000596457 RCOR1Q9UKL0 485 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 USP20Q9Y2K6 914 aa12.24□□□□□ -0.45
LIG1-211ENST00000596457 MORC2Q9Y6X9 1032 aaPredicted RBP12.24□□□□□ -0.45
LIG1-211ENST00000596457 KIAA1671Q9BY89 1806 aa12.23□□□□□ -0.45
LIG1-211ENST00000596457 ADGRA3Q8IWK6 1321 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms