RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 B4GALT5O43286 388 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 HOXD13P35453 343 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 AFMP43652 599 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 CASP5P51878 434 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 UBE2HP62256 183 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 FAM189BP81408 668 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 DPYDQ12882 1025 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 FAM187BQ17R55 369 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 UBXN11Q5T124 520 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 NT5DC1Q5TFE4 455 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.69□□□□□ -0.548e-7■□□□□ 9.2
LIG1-210ENST00000596332 ZNF720Q7Z2F6 126 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 SRGAP1Q7Z6B7 1085 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 USP38Q8NB14 1042 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 SPATA20Q8TB22 786 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 GPT2Q8TD30 523 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 NLRP7Q8WX94 980 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 HERVK_113Q902F9 699 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 TIGD1Q96MW7 591 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 IFIH1Q9BYX4 1025 aaKnown RBP11.69□□□□□ -0.54
LIG1-210ENST00000596332 GCOM2Q9BZD3 368 aaPredicted RBP11.69□□□□□ -0.54
LIG1-210ENST00000596332 IKZF4Q9H2S9 585 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 C17orf75Q9HAS0 396 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 USP25Q9UHP3 1055 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 GINS2Q9Y248 185 aa11.69□□□□□ -0.54
LIG1-210ENST00000596332 LOXHD1Q8IVV2 1947 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 SLC16A4O15374 487 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 TSPAN1O60635 241 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 RPS6KA5O75582 802 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 FGBP02675 491 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 MAPTP10636 758 aaKnown RBP11.68□□□□□ -0.54
LIG1-210ENST00000596332 NMT1P30419 496 aaKnown RBP11.68□□□□□ -0.54
LIG1-210ENST00000596332 SARSP49591 514 aaKnown RBP11.68□□□□□ -0.54
LIG1-210ENST00000596332 KCNA1Q09470 495 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 FAM109BQ6ICB4 259 aaPredicted RBP11.68□□□□□ -0.54
LIG1-210ENST00000596332 CNKSR3Q6P9H4 555 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 OTOP2Q7RTS6 562 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 SFR1Q86XK3 245 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 ELOA2Q8IYF1 753 aaPredicted RBP11.68□□□□□ -0.54
LIG1-210ENST00000596332 RPUSD2Q8IZ73 545 aaKnown RBP11.68□□□□□ -0.54
LIG1-210ENST00000596332 RASSF8Q8NHQ8 419 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 DRC1Q96MC2 740 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 HAPLN2Q9GZV7 340 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 ST6GALNAC4Q9H4F1 302 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 TMEM134Q9H6X4 195 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 MAGEF1Q9HAY2 307 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 PTPRHQ9HD43 1115 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 DACT1Q9NYF0 836 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 COLQQ9Y215 455 aaPredicted RBP11.68□□□□□ -0.54
LIG1-210ENST00000596332 LAMA2P24043 3122 aaKnown RBP11.68□□□□□ -0.54
LIG1-210ENST00000596332 COL4A6Q14031 1691 aa11.68□□□□□ -0.54
LIG1-210ENST00000596332 LRRIQ4A6NIV6 560 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 C9IYK1 514 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 GTPBP6O43824 516 aaPredicted RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 TRAK2O60296 914 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 PFKMP08237 780 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 ATF7P17544 494 aaPredicted RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 ARF4P18085 180 aaPredicted RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 DEFB103AP81534 67 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 GTF2BQ00403 316 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 COASYQ13057 564 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 ZC2HC1CQ53FD0 456 aaPredicted RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 EEF1DP3Q658K8 133 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 SLC39A4Q6P5W5 647 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 CHRDL2Q6WN34 429 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 UNC13DQ70J99 1090 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 EPM2AIP1Q7L775 607 aaPredicted RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 HAUS6Q7Z4H7 955 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 TMCO2Q7Z6W1 182 aaPredicted RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 ERCC4Q92889 916 aaPredicted RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 CCDC43Q96MW1 224 aaKnown RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 LBHD1Q9BQE6 289 aaPredicted RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 PYM1Q9BRP8 204 aaKnown RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 TRAIPQ9BWF2 469 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 TSPYL2Q9H2G4 693 aaPredicted RBP11.67□□□□□ -0.54
LIG1-210ENST00000596332 PARVGQ9HBI0 331 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 OLFML3Q9NRN5 406 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 RGS18Q9NS28 235 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 AGPAT5Q9NUQ2 364 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 RNF19AQ9NV58 838 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 PANK4Q9NVE7 773 aa11.67□□□□□ -0.54
LIG1-210ENST00000596332 LAMA3Q16787 3333 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 PTPRSQ13332 1948 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.66□□□□□ -0.54
LIG1-210ENST00000596332 A0A1B0GUA9 196 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 ABHD14A-ACY1A0A1B0GW23 586 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 PVALEFA0A1B0GWK0 134 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 M0QZ92 97 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 ACKR2O00590 384 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 GPR182O15218 404 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 MEFVO15553 781 aaPredicted RBP11.66□□□□□ -0.54
LIG1-210ENST00000596332 BMP6P22004 513 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 PROZP22891 400 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 MCM4P33991 863 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 PHKA2P46019 1235 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 WDR5P61964 334 aaKnown RBP11.66□□□□□ -0.54
LIG1-210ENST00000596332 NFX1Q12986 1120 aaKnown RBP11.66□□□□□ -0.54
LIG1-210ENST00000596332 STK4Q13043 487 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 PNOCQ13519 176 aa11.66□□□□□ -0.54
LIG1-210ENST00000596332 TFDP1Q14186 410 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms