RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 A0A087WWV3 80 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 A0A0U1RQF3 1178 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 SRGAP2CP0DJJ0 459 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 ATF7P17544 494 aaPredicted RBP16.8■□□□□ 0.28
TRIM28-205ENST00000595028 MUTP22033 750 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 SSTR3P32745 418 aaPredicted RBP16.8■□□□□ 0.28
TRIM28-205ENST00000595028 PRPHP41219 470 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 PHKA2P46019 1235 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 MXD4Q14582 209 aaPredicted RBP16.8■□□□□ 0.28
TRIM28-205ENST00000595028 LARP1BQ659C4 914 aaKnown RBP16.8■□□□□ 0.28
TRIM28-205ENST00000595028 ZNF598Q86UK7 904 aaKnown RBP16.8■□□□□ 0.28
TRIM28-205ENST00000595028 IGSF22Q8N9C0 903 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 ASAP3Q8TDY4 903 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 P2RX5Q93086 422 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 NACC1Q96RE7 527 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 TRAIPQ9BWF2 469 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 RAB34Q9BZG1 259 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 MINDY3Q9H8M7 445 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 LRWD1Q9UFC0 647 aa16.8■□□□□ 0.28
TRIM28-205ENST00000595028 GRM6O15303 877 aa16.79■□□□□ 0.28
TRIM28-205ENST00000595028 ALADP13716 330 aa16.79■□□□□ 0.28
TRIM28-205ENST00000595028 ARL2P36404 184 aa16.79■□□□□ 0.28
TRIM28-205ENST00000595028 CCT6AP40227 531 aaKnown RBP16.79■□□□□ 0.28
TRIM28-205ENST00000595028 ATP2C1P98194 919 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-205ENST00000595028 CAPSQ13938 189 aa16.79■□□□□ 0.28
TRIM28-205ENST00000595028 TFDP1Q14186 410 aa16.79■□□□□ 0.28
TRIM28-205ENST00000595028 TWF2Q6IBS0 349 aaKnown RBP16.79■□□□□ 0.28
TRIM28-205ENST00000595028 IFNLR1Q8IU57 520 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-205ENST00000595028 LRRC43Q8N309 656 aa16.79■□□□□ 0.28
TRIM28-205ENST00000595028 RNF169Q8NCN4 708 aa16.79■□□□□ 0.28
TRIM28-205ENST00000595028 POLR3FQ9H1D9 316 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-205ENST00000595028 KCNH6Q9H252 994 aa16.79■□□□□ 0.28
TRIM28-205ENST00000595028 UBE2ZQ9H832 354 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-205ENST00000595028 HCSTQ9UBK5 93 aa16.79■□□□□ 0.28
TRIM28-205ENST00000595028 ZNF318Q5VUA4 2279 aa16.79■□□□□ 0.28
TRIM28-205ENST00000595028 EOMESO95936 686 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 GLRA2P23416 452 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 RAB27AP51159 221 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 PTENP60484 403 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 PDIA5Q14554 519 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 NAALADL2Q58DX5 795 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 CLLU1OSQ5K130 101 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 ABI1Q8IZP0 508 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 MCPH1Q8NEM0 835 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 SNX29Q8TEQ0 813 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 STK24Q9Y6E0 443 aa16.78■□□□□ 0.28
TRIM28-205ENST00000595028 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-205ENST00000595028 ARHGEF35A5YM69 484 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 ITGB1P05556 798 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 SKIP12755 728 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 POU5F1BQ06416 359 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 PCBP1Q15365 356 aaKnown RBP eCLIP16.77■□□□□ 0.284e-6■■■■■ 41.5
TRIM28-205ENST00000595028 IL17AQ16552 155 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 ECM1Q16610 540 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 LEXMQ3ZCV2 418 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 SPOUT1Q5T280 376 aaKnown RBP16.77■□□□□ 0.28
TRIM28-205ENST00000595028 PADI6Q6TGC4 694 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 DTHD1Q6ZMT9 781 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 KLHL23Q8NBE8 558 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-205ENST00000595028 CASD1Q96PB1 797 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 NFKBIZQ9BYH8 718 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 NSUN3Q9H649 340 aaKnown RBP16.77■□□□□ 0.28
TRIM28-205ENST00000595028 CWH43Q9H720 699 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 ALG13Q9NP73 1137 aaKnown RBP16.77■□□□□ 0.28
TRIM28-205ENST00000595028 GPRC5CQ9NQ84 441 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 AAASQ9NRG9 546 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 FAM105AQ9NUU6 356 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 TYW1Q9NV66 732 aaKnown RBP16.77■□□□□ 0.28
TRIM28-205ENST00000595028 PLAGL2Q9UPG8 496 aa16.77■□□□□ 0.28
TRIM28-205ENST00000595028 PP2D1A8MPX8 630 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 TSPAN1O60635 241 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 ERLIN2O94905 339 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 IL9P15248 144 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 LAG3P18627 525 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 PDCP20941 246 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 MBTD1Q05BQ5 628 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 BRAPQ7Z569 592 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 COLGALT1Q8NBJ5 622 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 HELQQ8TDG4 1101 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 MRPL9Q9BYD2 267 aaKnown RBP16.76■□□□□ 0.27
TRIM28-205ENST00000595028 KIAA1024Q9UPX6 916 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 PCDHB12Q9Y5F1 795 aa16.76■□□□□ 0.27
TRIM28-205ENST00000595028 VPS37CA5D8V6 355 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-205ENST00000595028 INO80B-WBP1J3KQ70 363 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 K7ELQ4 463 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-205ENST00000595028 ZNF623O75123 536 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 CSPG5O95196 566 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 CYP11B2P19099 503 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 KCNA5P22460 613 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 HOXA11P31270 313 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-205ENST00000595028 CAMK1Q14012 370 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 TCEAL5Q5H9L2 206 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 KRT79Q5XKE5 535 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 LRRC55Q6ZSA7 311 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 MAEAQ7L5Y9 396 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 SPPL3Q8TCT6 385 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 RSPH1Q8WYR4 309 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 LPPQ93052 612 aa16.75■□□□□ 0.27
TRIM28-205ENST00000595028 CCDC51Q96ER9 411 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms