RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 C17orf75Q9HAS0 396 aa11.82□□□□□ -0.52
SMARCA4-213ENST00000587988 LARSQ9P2J5 1176 aaKnown RBP11.82□□□□□ -0.52
SMARCA4-213ENST00000587988 ARHGAP28Q9P2N2 729 aa11.82□□□□□ -0.52
SMARCA4-213ENST00000587988 ST3GAL5Q9UNP4 418 aa11.82□□□□□ -0.52
SMARCA4-213ENST00000587988 USP20Q9Y2K6 914 aa11.82□□□□□ -0.52
SMARCA4-213ENST00000587988 SQORQ9Y6N5 450 aa11.82□□□□□ -0.52
SMARCA4-213ENST00000587988 PVALEFA0A1B0GWK0 134 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 INO80B-WBP1J3KQ70 363 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 PARNO95453 639 aaKnown RBP11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 EDN1P05305 212 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 MYL1P05976 194 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 GAP43P17677 238 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 PHKA2P46019 1235 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 NCKAP1LP55160 1127 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 FPGSQ05932 587 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 EHHADHQ08426 723 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 NFX1Q12986 1120 aaKnown RBP11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 CAMK4Q16566 473 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 KMT5BQ4FZB7 885 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 PLEKHG4Q58EX7 1191 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 HERC4Q5GLZ8 1057 aaPredicted RBP11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 TSHZ1Q6ZSZ6 1077 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 SRGAP1Q7Z6B7 1085 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 CCDC65Q8IXS2 484 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 ELOA2Q8IYF1 753 aaPredicted RBP11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 TMEM161BQ8NDZ6 487 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 DBF4BQ8NFT6 615 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 DEPTORQ8TB45 409 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 SPIRE2Q8WWL2 714 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 NFKBIZQ9BYH8 718 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 INO80BQ9C086 356 aaPredicted RBP11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 CCDC113Q9H0I3 377 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 ERVK-5Q9HDB9 667 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 IL23AQ9NPF7 189 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 PADI3Q9ULW8 664 aa11.81□□□□□ -0.52
SMARCA4-213ENST00000587988 TTLL13PA6NNM8 815 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 K7ENM7 598 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 B4GALT5O43286 388 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 RPN1P04843 607 aaKnown RBP11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 MYBP10242 640 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 MAPTP10636 758 aaKnown RBP11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 RFC2P35250 354 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 MAGEA10P43363 369 aaPredicted RBP11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 CASP5P51878 434 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 SMTNP53814 917 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 PAK2Q13177 524 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 PPIGQ13427 754 aaKnown RBP eCLIP11.8□□□□□ -0.528e-7■□□□□ 10.5
SMARCA4-213ENST00000587988 AMHR2Q16671 573 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 ZC2HC1CQ53FD0 456 aaPredicted RBP11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 ZNF720Q7Z2F6 126 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 HAUS6Q7Z4H7 955 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 ZBTB8OSQ8IWT0 167 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 FAM178BQ8IXR5 827 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 USP38Q8NB14 1042 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 GLIS3Q8NEA6 775 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 LBHD1Q9BQE6 289 aaPredicted RBP11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 STRA6Q9BX79 667 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 IFIH1Q9BYX4 1025 aaKnown RBP11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 C2orf40Q9H1Z8 148 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 TMX1Q9H3N1 280 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 FZD8Q9H461 694 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 CLSTN2Q9H4D0 955 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 TMEM134Q9H6X4 195 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 MRPL44Q9H9J2 332 aaKnown RBP11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 SEL1LQ9UBV2 794 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 PCDHA5Q9Y5H7 936 aa11.8□□□□□ -0.52
SMARCA4-213ENST00000587988 DENND3A2RUS2 1198 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 K7ERI5 159 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 GPR182O15218 404 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 MGEA5O60502 916 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 TSPAN1O60635 241 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 PPP1R37O75864 691 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 PRKCBP05771 671 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 SFPQP23246 707 aaKnown RBP eCLIP11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 SARSP49591 514 aaKnown RBP11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 GTF2BQ00403 316 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 STK4Q13043 487 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 FAM26FQ5R3K3 315 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 TMEM240Q5SV17 173 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 ZNF365Q70YC5 407 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 CATSPER4Q7RTX7 472 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 RTN4RL1Q86UN2 441 aaPredicted RBP11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 RPUSD2Q8IZ73 545 aaKnown RBP11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 SPATA20Q8TB22 786 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 CCDC34Q96HJ3 373 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 CPB2Q96IY4 423 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 SLC39A2Q9NP94 309 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 OLFML3Q9NRN5 406 aa11.79□□□□□ -0.52
SMARCA4-213ENST00000587988 ERLIN2O94905 339 aa11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 PRPF6O94906 941 aaKnown RBP11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 RHOBTB3O94955 611 aa11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 GCNT3O95395 438 aa11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 MBD3O95983 291 aa11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 PFKMP08237 780 aa11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 ARF4P18085 180 aaPredicted RBP11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 HOXA11P31270 313 aaPredicted RBP11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 EFNA5P52803 228 aa11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 KCNA1Q09470 495 aa11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 DSC3Q14574 896 aa11.78□□□□□ -0.52
SMARCA4-213ENST00000587988 NFKBIBQ15653 356 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms