RNA–Protein interactions for RNA: ENST00000585163.5

CDK5RAP3-237, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,519 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-237ENST00000585163 TMOD1P28289 359 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ARHGAP44Q17R89 818 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 KRT71Q3SY84 523 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 CEP55Q53EZ4 464 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 RHOT2Q8IXI1 618 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ALG3Q92685 438 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 WDR11Q9BZH6 1224 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 TRIM31Q9BZY9 425 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ERVK-5Q9HDB9 667 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 DCDC2CA8MYV0 355 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 EXOC3O60645 756 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ENTPD3O75355 529 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 MYCNP04198 464 aaPredicted RBP15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 POLR2MP0CAP2 368 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 VCAM1P19320 739 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 PDE6BP35913 854 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 MAGOHP61326 146 aaKnown RBP15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 DHX34Q14147 1143 aaKnown RBP15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 MYBPC2Q14324 1141 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 KCNV1Q6PIU1 500 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 MAGOHBQ96A72 148 aaKnown RBP15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 MASTLQ96GX5 879 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 AGPAT1Q99943 283 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 SEPT11Q9NVA2 429 aaKnown RBP15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ATP8A1Q9Y2Q0 1164 aa15.36■□□□□ 0.05
CDK5RAP3-237ENST00000585163 SPATA31A6Q5VVP1 1343 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 COL11A2P13942 1736 aaPredicted RBP15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 FAM187AA6NFU0 413 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 LRRN2O75325 713 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 BCRP11274 1271 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 DRG2P55039 364 aaKnown RBP15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 IFT88Q13099 833 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 B3GNT9Q6UX72 402 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 NLGN1Q8N2Q7 840 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 HOOK2Q96ED9 719 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 UNC45AQ9H3U1 944 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ALG6Q9Y672 507 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 MYH11P35749 1972 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ZNF646O15015 1829 aaPredicted RBP15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 SLX4Q8IY92 1834 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 VIL1P09327 827 aaKnown RBP15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 COPB2P35606 906 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ECE1P42892 770 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 MAPK7Q13164 816 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ZNF211Q13398 564 aaPredicted RBP15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 TCEAL1Q15170 157 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ADAT2Q7Z6V5 191 aaKnown RBP15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 SYCP3Q8IZU3 236 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 GLG1Q92896 1179 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 TLCD1Q96CP7 247 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 PSMD1Q99460 953 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ZNF577Q9BSK1 485 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 TDRD3Q9H7E2 651 aaKnown RBP15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 LRRC4CQ9HCJ2 640 aa15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 DDX20Q9UHI6 824 aaKnown RBP15.35■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ECE2O60344 883 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 TRIM37O94972 964 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 NUDT17P0C025 328 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 GTF2A1P52655 376 aaPredicted RBP15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 UBXN2AP68543 259 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 IFFO1Q0D2I5 559 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 KIAA1755Q5JYT7 1200 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 RNF187Q5TA31 235 aaPredicted RBP15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 C11orf63Q6NUN7 778 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 DAW1Q8N136 415 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 RDH13Q8NBN7 331 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 BANK1Q8NDB2 785 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 RAPGEF5Q92565 580 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 CSRNP1Q96S65 589 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 LXNQ9BS40 222 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 EPB41L4BQ9H329 900 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 SYNGAP1Q96PV0 1343 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 C5orf60A6NFR6 353 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 MIF4GDA9UHW6 222 aaKnown RBP15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 H0YHG0 523 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 HIP1RO75146 1068 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ARP10275 920 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ACTN3Q08043 901 aaPredicted RBP15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 DRP2Q13474 957 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ARMC9Q7Z3E5 817 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 JAMLQ86YT9 394 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 SLC20A1Q8WUM9 679 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 PABPC3Q9H361 631 aaKnown RBP15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 TMOD4Q9NZQ9 345 aa15.34■□□□□ 0.05
CDK5RAP3-237ENST00000585163 PFASO15067 1338 aa15.33■□□□□ 0.05
CDK5RAP3-237ENST00000585163 ARHGEF35A5YM69 484 aa15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 KIAA0391O15091 583 aaKnown RBP15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 KRT13P13646 458 aa15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 USP8P40818 1118 aa15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 DLG4P78352 724 aa15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 SETQ01105 290 aaPredicted RBP15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 PPARDQ03181 441 aa15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 PLCB4Q15147 1175 aa15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 INTS8Q75QN2 995 aaKnown RBP15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 TMEM174Q8WUU8 243 aa15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 VTI1AQ96AJ9 217 aa15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 VCPKMTQ9H867 229 aa15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 CNOT10Q9H9A5 744 aaKnown RBP15.33■□□□□ 0.04
CDK5RAP3-237ENST00000585163 EHMT1Q9H9B1 1298 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms