RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 VN1R2Q8NFZ6 395 aa22.89■■□□□ 1.25
SHMT1-209ENST00000582653 TMEM143Q96AN5 459 aa22.89■■□□□ 1.25
SHMT1-209ENST00000582653 MRPL9Q9BYD2 267 aaKnown RBP22.89■■□□□ 1.25
SHMT1-209ENST00000582653 USP15Q9Y4E8 981 aaPredicted RBP22.89■■□□□ 1.25
SHMT1-209ENST00000582653 LOC730098B7Z3J9 87 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 ZNF623O75123 536 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 PBX3P40426 434 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 ALDH7A1P49419 539 aaKnown RBP22.88■■□□□ 1.25
SHMT1-209ENST00000582653 POLGP54098 1239 aaPredicted RBP22.88■■□□□ 1.25
SHMT1-209ENST00000582653 RBM10P98175 930 aaKnown RBP22.88■■□□□ 1.25
SHMT1-209ENST00000582653 PLPP4Q5VZY2 271 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 TMC7Q7Z402 723 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 CCDC83Q8IWF9 413 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 TPH2Q8IWU9 490 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 SLC39A11Q8N1S5 342 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 SLC7A3Q8WY07 619 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 DHX33Q9H6R0 707 aaKnown RBP22.88■■□□□ 1.25
SHMT1-209ENST00000582653 IFT122Q9HBG6 1241 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 ENTPD7Q9NQZ7 604 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 PCDHA12Q9UN75 941 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 LIMCH1Q9UPQ0 1083 aa22.88■■□□□ 1.25
SHMT1-209ENST00000582653 HIDE1A8MVS5 230 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 SLITRK3O94933 977 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 CBX2Q14781 532 aaPredicted RBP22.87■■□□□ 1.25
SHMT1-209ENST00000582653 CALCRLQ16602 461 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 LONRF3Q496Y0 759 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 XKR9Q5GH70 373 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 TWF2Q6IBS0 349 aaKnown RBP22.87■■□□□ 1.25
SHMT1-209ENST00000582653 OTUD6AQ7L8S5 288 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 MRPL43Q8N983 215 aaKnown RBP22.87■■□□□ 1.25
SHMT1-209ENST00000582653 PRPF31Q8WWY3 499 aaKnown RBP22.87■■□□□ 1.25
SHMT1-209ENST00000582653 SUSD6Q92537 303 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 PHF7Q9BWX1 381 aaPredicted RBP22.87■■□□□ 1.25
SHMT1-209ENST00000582653 S1PR5Q9H228 398 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 ZSWIM4Q9H7M6 989 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 MUTYHQ9UIF7 546 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 PIN4Q9Y237 131 aaKnown RBP22.87■■□□□ 1.25
SHMT1-209ENST00000582653 COL4A3BPQ9Y5P4 624 aa22.87■■□□□ 1.25
SHMT1-209ENST00000582653 SRGAP2CP0DJJ0 459 aa22.86■■□□□ 1.25
SHMT1-209ENST00000582653 SRGAP2BP0DMP2 458 aa22.86■■□□□ 1.25
SHMT1-209ENST00000582653 ATP2B1P20020 1258 aa22.86■■□□□ 1.25
SHMT1-209ENST00000582653 TXKP42681 527 aa22.86■■□□□ 1.25
SHMT1-209ENST00000582653 BCAR1P56945 870 aa22.86■■□□□ 1.25
SHMT1-209ENST00000582653 CATSPER4Q7RTX7 472 aa22.86■■□□□ 1.25
SHMT1-209ENST00000582653 LPPQ93052 612 aa22.86■■□□□ 1.25
SHMT1-209ENST00000582653 EIF2AK1Q9BQI3 630 aaKnown RBP22.86■■□□□ 1.25
SHMT1-209ENST00000582653 TTC12Q9H892 705 aaPredicted RBP22.86■■□□□ 1.25
SHMT1-209ENST00000582653 FAM105AQ9NUU6 356 aa22.86■■□□□ 1.25
SHMT1-209ENST00000582653 CARNS1A5YM72 827 aa22.85■■□□□ 1.25
SHMT1-209ENST00000582653 NEMFO60524 1076 aa22.85■■□□□ 1.25
SHMT1-209ENST00000582653 RFC5P40937 340 aa22.85■■□□□ 1.25
SHMT1-209ENST00000582653 ANKRD54Q6NXT1 300 aa22.85■■□□□ 1.25
SHMT1-209ENST00000582653 EDAQ92838 391 aa22.85■■□□□ 1.25
SHMT1-209ENST00000582653 KIF2CQ99661 725 aa22.85■■□□□ 1.25
SHMT1-209ENST00000582653 A0A087WWV3 80 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 NT5C1B-RDH14C9J2C7 533 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 ASAP2O43150 1006 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 OFD1O75665 1012 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 HOXB8P17481 243 aaPredicted RBP22.84■■□□□ 1.25
SHMT1-209ENST00000582653 TECP42680 631 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 RAB27AP51159 221 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 LAMTOR4Q0VGL1 99 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 SMC1AQ14683 1233 aaKnown RBP22.84■■□□□ 1.25
SHMT1-209ENST00000582653 BMS1Q14692 1282 aaKnown RBP22.84■■□□□ 1.25
SHMT1-209ENST00000582653 EMC2Q15006 297 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 C8orf34Q49A92 452 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 SYCE2Q6PIF2 218 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 SRGAP1Q7Z6B7 1085 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 PSPC1Q8WXF1 523 aaKnown RBP22.84■■□□□ 1.25
SHMT1-209ENST00000582653 MTMR9Q96QG7 549 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 HSD17B14Q9BPX1 270 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 TMEM60Q9H2L4 133 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 MINDY3Q9H8M7 445 aa22.84■■□□□ 1.25
SHMT1-209ENST00000582653 C2orf71A6NGG8 1288 aa22.83■■□□□ 1.25
SHMT1-209ENST00000582653 MEIS3P2A8K0S8 358 aa22.83■■□□□ 1.25
SHMT1-209ENST00000582653 GAS2O43903 313 aaKnown RBP22.83■■□□□ 1.25
SHMT1-209ENST00000582653 CXCL14O95715 111 aa22.83■■□□□ 1.25
SHMT1-209ENST00000582653 GLB1LQ6UWU2 654 aa22.83■■□□□ 1.25
SHMT1-209ENST00000582653 TCP11Q8WWU5 503 aa22.83■■□□□ 1.25
SHMT1-209ENST00000582653 PGBD4Q96DM1 585 aa22.83■■□□□ 1.25
SHMT1-209ENST00000582653 TMEM169Q96HH4 297 aa22.83■■□□□ 1.25
SHMT1-209ENST00000582653 AGPAT5Q9NUQ2 364 aa22.83■■□□□ 1.25
SHMT1-209ENST00000582653 MCM7P33993 719 aa22.82■■□□□ 1.24
SHMT1-209ENST00000582653 NOMO2Q5JPE7 1267 aa22.82■■□□□ 1.24
SHMT1-209ENST00000582653 MRPL10Q7Z7H8 261 aaKnown RBP22.82■■□□□ 1.24
SHMT1-209ENST00000582653 FERMT3Q86UX7 667 aa22.82■■□□□ 1.24
SHMT1-209ENST00000582653 C8orf76Q96K31 380 aa22.82■■□□□ 1.24
SHMT1-209ENST00000582653 RPGRIP1Q96KN7 1286 aa22.82■■□□□ 1.24
SHMT1-209ENST00000582653 MTRQ99707 1265 aa22.82■■□□□ 1.24
SHMT1-209ENST00000582653 NRDE2Q9H7Z3 1164 aa22.82■■□□□ 1.24
SHMT1-209ENST00000582653 XPNPEP1Q9NQW7 623 aa22.82■■□□□ 1.24
SHMT1-209ENST00000582653 TBC1D13Q9NVG8 400 aa22.82■■□□□ 1.24
SHMT1-209ENST00000582653 PCDHB2Q9Y5E7 798 aa22.82■■□□□ 1.24
SHMT1-209ENST00000582653 GALTP07902 379 aa22.81■■□□□ 1.24
SHMT1-209ENST00000582653 HOXA11P31270 313 aaPredicted RBP22.81■■□□□ 1.24
SHMT1-209ENST00000582653 HOXD11P31277 338 aaPredicted RBP22.81■■□□□ 1.24
SHMT1-209ENST00000582653 SAFBQ15424 915 aaKnown RBP eCLIP22.81■■□□□ 1.24
SHMT1-209ENST00000582653 LLGL2Q6P1M3 1020 aa22.81■■□□□ 1.24
SHMT1-209ENST00000582653 HFE2Q6ZVN8 426 aa22.81■■□□□ 1.24
SHMT1-209ENST00000582653 RNF149Q8NC42 400 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms