RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 SLC44A3Q8N4M1 653 aa14.38□□□□□ -0.11
SS18-219ENST00000581570 DCLK2Q8N568 766 aa14.38□□□□□ -0.11
SS18-219ENST00000581570 CMASQ8NFW8 434 aaPredicted RBP14.38□□□□□ -0.11
SS18-219ENST00000581570 CRYGNQ8WXF5 182 aa14.38□□□□□ -0.11
SS18-219ENST00000581570 STAMQ92783 540 aa14.38□□□□□ -0.11
SS18-219ENST00000581570 DLL3Q9NYJ7 618 aa14.38□□□□□ -0.11
SS18-219ENST00000581570 SSUH2Q9Y2M2 353 aa14.38□□□□□ -0.11
SS18-219ENST00000581570 CCDC195A0A1B0GUA6 201 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 MEIS3P2A8K0S8 358 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 WDR64B1ANS9 1081 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 SLC27A2O14975 620 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 LILRB3O75022 631 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 ALDH2P05091 517 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 SRFP11831 508 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 PRKCEQ02156 737 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 FUT2Q10981 343 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 RTN1Q16799 776 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 PHLDB3Q6NSJ2 640 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 ZNF280BQ86YH2 543 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 C1orf210Q8IVY1 113 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 NXPE3Q969Y0 559 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 WDR6Q9NNW5 1121 aaKnown RBP14.37□□□□□ -0.11
SS18-219ENST00000581570 MAN1C1Q9NR34 630 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 DISC1Q9NRI5 854 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 MRPL17Q9NRX2 175 aaKnown RBP14.37□□□□□ -0.11
SS18-219ENST00000581570 FAM105AQ9NUU6 356 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 EPS15L1Q9UBC2 864 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 PIN4Q9Y237 131 aaKnown RBP14.37□□□□□ -0.11
SS18-219ENST00000581570 SIT1Q9Y3P8 196 aa14.37□□□□□ -0.11
SS18-219ENST00000581570 A0A087WZ62 844 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 ZNF623O75123 536 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 KRT37O76014 449 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 SFPQP23246 707 aaKnown RBP eCLIP14.36□□□□□ -0.11
SS18-219ENST00000581570 DRP2Q13474 957 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 PRR16Q569H4 304 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 APOA5Q6Q788 366 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 CYP26C1Q6V0L0 522 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 URGCPQ8TCY9 931 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 PGBD4Q96DM1 585 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 CNTNAP3BQ96NU0 1288 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 MYADMQ96S97 322 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 FDXACB1Q9BRP7 624 aaPredicted RBP14.36□□□□□ -0.11
SS18-219ENST00000581570 CNTNAP3Q9BZ76 1288 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 INO80BQ9C086 356 aaPredicted RBP14.36□□□□□ -0.11
SS18-219ENST00000581570 DLGAP2Q9P1A6 1054 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 DPP7Q9UHL4 492 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 FAN1Q9Y2M0 1017 aa14.36□□□□□ -0.11
SS18-219ENST00000581570 C2CD2LO14523 706 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 B4GALT3O60512 393 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 DDHD2O94830 711 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 MYBP10242 640 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 RAB27AP51159 221 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 AK2P54819 239 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 TARBP2Q15633 366 aaKnown RBP14.35□□□□□ -0.11
SS18-219ENST00000581570 RSPO4Q2I0M5 234 aaPredicted RBP14.35□□□□□ -0.11
SS18-219ENST00000581570 CREB3L3Q68CJ9 461 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 ELMSAN1Q6PJG2 1045 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 EXOC6Q8TAG9 804 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 GPR152Q8TDT2 470 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 FAM193BQ96PV7 902 aaPredicted RBP14.35□□□□□ -0.11
SS18-219ENST00000581570 RHOBTB2Q9BYZ6 727 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 DENND4AQ7Z401 1863 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 CLUHO75153 1309 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 CACNA1AO00555 2505 aa14.35□□□□□ -0.11
SS18-219ENST00000581570 NRP1O14786 923 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 ADAMTS3O15072 1205 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 INPPL1O15357 1258 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 ZBTB43O43298 467 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 URODP06132 367 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 ADH1AP07327 375 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 CIITAP33076 1130 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 DNM2P50570 870 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 UGCGQ16739 394 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 MTERF2Q49AM1 385 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 CATSPER4Q7RTX7 472 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 SMG7Q92540 1137 aaKnown RBP14.34□□□□□ -0.11
SS18-219ENST00000581570 RPS6KC1Q96S38 1066 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 TMEM175Q9BSA9 504 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 LSG1Q9H089 658 aaKnown RBP14.34□□□□□ -0.11
SS18-219ENST00000581570 ARHGEF3Q9NR81 526 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 KANSL3Q9P2N6 904 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 SSX2IPQ9Y2D8 614 aa14.34□□□□□ -0.11
SS18-219ENST00000581570 EP300Q09472 2414 aaPredicted RBP14.33□□□□□ -0.12
SS18-219ENST00000581570 CHMP2AO43633 222 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 KINO60870 393 aaKnown RBP14.33□□□□□ -0.12
SS18-219ENST00000581570 RFPL2O75678 378 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 GLUD1P00367 558 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 SOD2P04179 222 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 NECTIN1Q15223 517 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 DCLRE1AQ6PJP8 1040 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 AGMOQ6ZNB7 445 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 TAS1R1Q7RTX1 841 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 ZNF410Q86VK4 478 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 RHPN2Q8IUC4 686 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 REXO1Q8N1G1 1221 aaKnown RBP14.33□□□□□ -0.12
SS18-219ENST00000581570 SUMF1Q8NBK3 374 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 LENG9Q96B70 501 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 HERC2P3Q9BVR0 1158 aa14.33□□□□□ -0.12
SS18-219ENST00000581570 NIFKQ9BYG3 293 aaKnown RBP14.33□□□□□ -0.12
SS18-219ENST00000581570 ZMYND12Q9H0C1 365 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms