RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 DNAJC28Q9NX36 388 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 PPP4R1LQ9P1A2 415 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 DPP7Q9UHL4 492 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 EVLQ9UI08 416 aaPredicted RBP6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 TRHDEQ9UKU6 1024 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 CDY2AQ9Y6F7 541 aa6.2□□□□□ -1.42
SMCHD1-204ENST00000581226 MRPS9P82933 396 aaKnown RBP6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 CDK17Q00537 523 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 HGFACQ04756 655 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 MGAT5Q09328 741 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 TCIRG1Q13488 830 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 SPIDRQ14159 915 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 ACAP1Q15027 740 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 PGM2L1Q6PCE3 622 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 GLB1LQ6UWU2 654 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 LIMS2Q7Z4I7 341 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 TAX1BP1Q86VP1 789 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 AMOTL1Q8IY63 956 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 PPP1R14CQ8TAE6 165 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 AUTS2Q8WXX7 1259 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 UIMC1Q96RL1 719 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 FDXACB1Q9BRP7 624 aaPredicted RBP6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 CCM2LQ9NUG4 571 aaPredicted RBP6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 OAZ3Q9UMX2 235 aa6.19□□□□□ -1.42
SMCHD1-204ENST00000581226 MATN2O00339 956 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 CDC14BO60729 498 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 SEC24DO94855 1032 aaPredicted RBP6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 LY86O95711 162 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 GAAP10253 952 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 MTHFD2P13995 350 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 CR2P20023 1033 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 ADCY7P51828 1080 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 BPIFB4P59827 614 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 SRSF2Q01130 221 aaKnown RBP6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 BRDTQ58F21 947 aaPredicted RBP6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 ERICH6BQ5W0A0 696 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 GLB1L2Q8IW92 636 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 CBARPQ8N350 705 aaPredicted RBP6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 ANKRD53Q8N9V6 530 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 CXorf38Q8TB03 319 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 CFHR4Q92496 578 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 RELTQ969Z4 430 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 RPL10LQ96L21 214 aaKnown RBP6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 GNRHR2Q96P88 292 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 DPYSL5Q9BPU6 564 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 BDH2Q9BUT1 245 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 MEGF9Q9H1U4 602 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 SLC6A15Q9H2J7 730 aa6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 C14orf93Q9H972 538 aaKnown RBP6.18□□□□□ -1.42
SMCHD1-204ENST00000581226 SLC26A4O43511 780 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 MT-CO1P00395 513 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 CFBP00751 764 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 MYBL2P10244 700 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 IARSP41252 1262 aaKnown RBP6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 KIR2DL3P43628 341 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 CCT2P78371 535 aaKnown RBP6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 PLP2Q04941 152 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 CLUL1Q15846 466 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 ABCB5Q2M3G0 1257 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 INAVAQ3KP66 663 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 KRT40Q6A162 431 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 KCNK18Q7Z418 384 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 UNC5BQ8IZJ1 945 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 GIMAP8Q8ND71 665 aaPredicted RBP6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 MKS1Q9NXB0 559 aa6.17□□□□□ -1.42
SMCHD1-204ENST00000581226 GABRDO14764 452 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 TOX4O94842 621 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 ITGB3P05106 788 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 VSIG10L2P0DP72 767 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 MUM1Q2TAK8 710 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 LILRA6Q6PI73 481 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 CIR1Q86X95 450 aaPredicted RBP6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 PIK3C3Q8NEB9 887 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 C1orf162Q8NEQ5 155 aaPredicted RBP6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 TSPEARQ8WU66 669 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 RABGGTAQ92696 567 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 FAXDC2Q96IV6 333 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 SMAD5Q99717 465 aaKnown RBP6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 IFT122Q9HBG6 1241 aa6.16□□□□□ -1.42
SMCHD1-204ENST00000581226 A0A1W2PR48 441 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 SHTN1A0MZ66 631 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 TRIM75PA6NK02 468 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 GPR42O15529 346 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 FOXD2O60548 495 aaPredicted RBP6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 ALDH1A2O94788 518 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 JUNP05412 331 aaKnown RBP6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 OSMP13725 252 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 MTNR1BP49286 362 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 GAGE13Q4V321 117 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 SHCBP1Q8NEM2 672 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 FUBP3Q96I24 572 aaKnown RBP eCLIP6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 RBM15Q96T37 977 aaKnown RBP eCLIP6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 ACE2Q9BYF1 805 aaPredicted RBP6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 ASPSCR1Q9BZE9 553 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 ING3Q9NXR8 418 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 DDX56Q9NY93 547 aaKnown RBP6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 GPR45Q9Y5Y3 372 aa6.15□□□□□ -1.42
SMCHD1-204ENST00000581226 PMS2P1A4D2B8 440 aa6.14□□□□□ -1.43
SMCHD1-204ENST00000581226 PRAMEF4O60810 478 aa6.14□□□□□ -1.43
SMCHD1-204ENST00000581226 LTA4HP09960 611 aaKnown RBP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms