RNA–Protein interactions for RNA: ENST00000580670.6

CDK5RAP3-219, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 1,768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-219ENST00000580670 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.21■□□□□ 0.02
CDK5RAP3-219ENST00000580670 IKZF4Q9H2S9 585 aa15.21■□□□□ 0.02
CDK5RAP3-219ENST00000580670 HDAC6Q9UBN7 1215 aa15.21■□□□□ 0.02
CDK5RAP3-219ENST00000580670 EXOC7Q9UPT5 735 aa15.21■□□□□ 0.02
CDK5RAP3-219ENST00000580670 C17orf102A2RUQ5 167 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 KCNJ18B7U540 433 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ASAP2O43150 1006 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 SERPINC1P01008 464 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 SCP2P22307 547 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ABCD1P33897 745 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 TFDP1Q14186 410 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 KCNJ12Q14500 433 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 LRRC55Q6ZSA7 311 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 IRF2BP1Q8IU81 584 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 FAM114A1Q8IWE2 563 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 RNF149Q8NC42 400 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 MAP7D2Q96T17 732 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 UNC93B1Q9H1C4 597 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 MAGEC2Q9UBF1 373 aaPredicted RBP15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 AKT3Q9Y243 479 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CENPFP49454 3210 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 SCN10AQ9Y5Y9 1956 aa15.2■□□□□ 0.02
CDK5RAP3-219ENST00000580670 MBLAC1A4D2B0 266 aaPredicted RBP15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CLIC2O15247 247 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 MYCP01106 439 aaPredicted RBP15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 NR3C1P04150 777 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 GNAT1P11488 350 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 SPAG1Q07617 926 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ADAM9Q13443 819 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 HIC1Q14526 733 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 NBPF20Q3BBV1 942 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 TCP11X2Q5H9J9 407 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 TAS1R3Q7RTX0 852 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 MAP4K3Q8IVH8 894 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 GOLGA5Q8TBA6 731 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 NLRP4Q96MN2 994 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CEP63Q96MT8 703 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 IFNKQ9P0W0 207 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 K7ERI5 159 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 VTNP04004 478 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CYP2C9P11712 490 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 NR2F2P24468 414 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 RPL13P26373 211 aaKnown RBP15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ZNF75DP51815 510 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ADAM17P78536 824 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ZNF200P98182 395 aaPredicted RBP15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 STRN3Q13033 797 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CDCA2Q69YH5 1023 aaPredicted RBP15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CTU1Q7Z7A3 348 aaKnown RBP15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ZBTB8OSQ8IWT0 167 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ZC3H3Q8IXZ2 948 aaKnown RBP15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 KIAA0319LQ8IZA0 1049 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ANKRD20A12PQ8NF67 263 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 KCNN1Q92952 543 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ZNF668Q96K58 619 aaPredicted RBP15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 FAM49AQ9H0Q0 323 aaPredicted RBP15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 AGPAT3Q9NRZ7 376 aa15.19■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CETN3O15182 167 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 TREHO43280 583 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 EEF1GP26641 437 aaKnown RBP15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 HOXC8P31273 242 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 EFNA5P52803 228 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 LBX1P52954 281 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ACLYP53396 1101 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 UBASH3AP57075 661 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 KRT31Q15323 416 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 FAM47CQ5HY64 1035 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 VTI1AQ96AJ9 217 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 BICD1Q96G01 975 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CNOT6LQ96LI5 555 aaKnown RBP15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 PPP1R16BQ96T49 567 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 C2orf40Q9H1Z8 148 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 TMEM134Q9H6X4 195 aa15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CGNQ9P2M7 1197 aaKnown RBP15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 LIMA1Q9UHB6 759 aaKnown RBP15.18■□□□□ 0.02
CDK5RAP3-219ENST00000580670 PHLPP2Q6ZVD8 1323 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 SMIM35A0A1B0GVV1 85 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CABYRO75952 493 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 MTFR1Q15390 333 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 NFIL3Q16649 462 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 RUFY4Q6ZNE9 571 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 FILIP1Q7Z7B0 1213 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ARRDC4Q8NCT1 418 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CTAGE1Q96RT6 745 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 TSEN34Q9BSV6 310 aaKnown RBP15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 XPO4Q9C0E2 1151 aaKnown RBP15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 GTF2IRD1Q9UHL9 959 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 ZKSCAN5Q9Y2L8 839 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 FRMPD3Q5JV73 1810 aa15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 TRIP12Q14669 1992 aaPredicted RBP15.17■□□□□ 0.02
CDK5RAP3-219ENST00000580670 MOXD2PA6NHM9 499 aa15.16■□□□□ 0.02
CDK5RAP3-219ENST00000580670 TISP43B9A030 160 aa15.16■□□□□ 0.02
CDK5RAP3-219ENST00000580670 HNRNPDLO14979 420 aaKnown RBP15.16■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CBFA2T2O43439 604 aa15.16■□□□□ 0.02
CDK5RAP3-219ENST00000580670 HSPA1AP0DMV8 641 aaKnown RBP15.16■□□□□ 0.02
CDK5RAP3-219ENST00000580670 HSPA1BP0DMV9 641 aaKnown RBP15.16■□□□□ 0.02
CDK5RAP3-219ENST00000580670 CCL5P13501 91 aa15.16■□□□□ 0.02
CDK5RAP3-219ENST00000580670 PHKA2P46019 1235 aa15.16■□□□□ 0.02
CDK5RAP3-219ENST00000580670 MTIF2P46199 727 aaKnown RBP15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms