RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CDHR5Q9HBB8 845 aa27.59■■■□□ 2.01
SHMT1-207ENST00000580002 A0A087WZ62 844 aa27.58■■■□□ 2.01
SHMT1-207ENST00000580002 PDXKO00764 312 aa27.58■■■□□ 2.01
SHMT1-207ENST00000580002 KIF20AO95235 890 aa27.58■■■□□ 2.01
SHMT1-207ENST00000580002 LRRC63Q05C16 580 aa27.58■■■□□ 2.01
SHMT1-207ENST00000580002 MXD4Q14582 209 aaPredicted RBP27.58■■■□□ 2.01
SHMT1-207ENST00000580002 PPP2R5AQ15172 486 aa27.58■■■□□ 2.01
SHMT1-207ENST00000580002 PTPN21Q16825 1174 aa27.58■■■□□ 2.01
SHMT1-207ENST00000580002 SLC39A4Q6P5W5 647 aa27.58■■■□□ 2.01
SHMT1-207ENST00000580002 DNAJB3Q8WWF6 145 aa27.58■■■□□ 2.01
SHMT1-207ENST00000580002 FDXACB1Q9BRP7 624 aaPredicted RBP27.58■■■□□ 2.01
SHMT1-207ENST00000580002 TYW1Q9NV66 732 aaKnown RBP27.58■■■□□ 2.01
SHMT1-207ENST00000580002 GTF2IRD1Q9UHL9 959 aa27.58■■■□□ 2.01
SHMT1-207ENST00000580002 FANCCQ00597 558 aa27.58■■■□□ 2
SHMT1-207ENST00000580002 STXBP4Q6ZWJ1 553 aa27.58■■■□□ 2
SHMT1-207ENST00000580002 WNT8BQ93098 351 aa27.58■■■□□ 2
SHMT1-207ENST00000580002 NAP1L5Q96NT1 182 aaPredicted RBP27.58■■■□□ 2
SHMT1-207ENST00000580002 CTAGE1Q96RT6 745 aa27.58■■■□□ 2
SHMT1-207ENST00000580002 TSG101Q99816 390 aa27.58■■■□□ 2
SHMT1-207ENST00000580002 AGPAT3Q9NRZ7 376 aa27.58■■■□□ 2
SHMT1-207ENST00000580002 IQCF3P0C7M6 154 aa27.57■■■□□ 2
SHMT1-207ENST00000580002 APTXQ7Z2E3 356 aaKnown RBP27.57■■■□□ 2
SHMT1-207ENST00000580002 MAP4K3Q8IVH8 894 aa27.57■■■□□ 2
SHMT1-207ENST00000580002 GBP3Q9H0R5 595 aa27.57■■■□□ 2
SHMT1-207ENST00000580002 PCIF1Q9H4Z3 704 aa27.57■■■□□ 2
SHMT1-207ENST00000580002 IFT122Q9HBG6 1241 aa27.57■■■□□ 2
SHMT1-207ENST00000580002 UBE4BO95155 1302 aa27.57■■■□□ 2
SHMT1-207ENST00000580002 ADCY5O95622 1261 aa27.56■■■□□ 2
SHMT1-207ENST00000580002 CDK11BP21127 795 aaKnown RBP27.56■■■□□ 2
SHMT1-207ENST00000580002 TMOD1P28289 359 aa27.56■■■□□ 2
SHMT1-207ENST00000580002 CASP4P49662 377 aa27.56■■■□□ 2
SHMT1-207ENST00000580002 ADAM9Q13443 819 aa27.56■■■□□ 2
SHMT1-207ENST00000580002 FBXO46Q6PJ61 603 aaPredicted RBP27.56■■■□□ 2
SHMT1-207ENST00000580002 K7ERI5 159 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 NR3C1P04150 777 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 NLRP11P59045 1033 aaKnown RBP27.55■■■□□ 2
SHMT1-207ENST00000580002 ITGA7Q13683 1181 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 ALCAMQ13740 583 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 KIZQ2M2Z5 673 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 CDCA2Q69YH5 1023 aaPredicted RBP27.55■■■□□ 2
SHMT1-207ENST00000580002 CBWD1Q9BRT8 395 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 THAP9Q9H5L6 903 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 IFNKQ9P0W0 207 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 FRMPD3Q5JV73 1810 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 KCNJ18B7U540 433 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 NR2F2P24468 414 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 ADSSP30520 456 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 GPC3P51654 580 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 TPM4P67936 248 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 FKBP3Q00688 224 aaKnown RBP27.55■■■□□ 2
SHMT1-207ENST00000580002 KCNJ12Q14500 433 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 ZC3H3Q8IXZ2 948 aaKnown RBP27.55■■■□□ 2
SHMT1-207ENST00000580002 ZBTB45Q96K62 511 aaPredicted RBP27.55■■■□□ 2
SHMT1-207ENST00000580002 CCDC113Q9H0I3 377 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 GINS2Q9Y248 185 aa27.55■■■□□ 2
SHMT1-207ENST00000580002 SMIM35A0A1B0GVV1 85 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 A0A1W2PQ45 241 aaPredicted RBP27.54■■■□□ 2
SHMT1-207ENST00000580002 A0A1W2PQY0 241 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 CALUO43852 315 aaPredicted RBP27.54■■■□□ 2
SHMT1-207ENST00000580002 CYP2J2P51589 502 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 PTENP60484 403 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 KRT31Q15323 416 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 TCP11X2Q5H9J9 407 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 SLC17A8Q8NDX2 589 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 ZNF333Q96JL9 665 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 TARS2Q9BW92 718 aaKnown RBP27.54■■■□□ 2
SHMT1-207ENST00000580002 TRIM5Q9C035 493 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 ADAMTS10Q9H324 1103 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 TMEM206Q9H813 350 aa27.54■■■□□ 2
SHMT1-207ENST00000580002 ASAP2O43150 1006 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 EDRF1Q3B7T1 1238 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 ARRDC4Q8NCT1 418 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 CNOT6LQ96LI5 555 aaKnown RBP27.53■■■□□ 2
SHMT1-207ENST00000580002 MAP7D2Q96T17 732 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 TSEN34Q9BSV6 310 aaKnown RBP27.53■■■□□ 2
SHMT1-207ENST00000580002 TAB2Q9NYJ8 693 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 MOXD2PA6NHM9 499 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 B4GALT5O43286 388 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 GPR32O75388 356 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 FGFR4P22455 802 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 ZNF75DP51815 510 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 SARM1Q6SZW1 724 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 NLRP7Q8WX94 980 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 XPO4Q9C0E2 1151 aaKnown RBP27.53■■■□□ 2
SHMT1-207ENST00000580002 HAPLN2Q9GZV7 340 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 TMEM134Q9H6X4 195 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 TRMT13Q9NUP7 481 aaKnown RBP27.53■■■□□ 2
SHMT1-207ENST00000580002 INTS13Q9NVM9 706 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 DMAC2Q9NW81 257 aa27.53■■■□□ 2
SHMT1-207ENST00000580002 INO80B-WBP1J3KQ70 363 aa27.52■■■□□ 2
SHMT1-207ENST00000580002 AKAP3O75969 853 aa27.52■■■□□ 2
SHMT1-207ENST00000580002 SERPINC1P01008 464 aa27.52■■■□□ 2
SHMT1-207ENST00000580002 MBTD1Q05BQ5 628 aa27.52■■■□□ 2
SHMT1-207ENST00000580002 TFDP1Q14186 410 aa27.52■■■□□ 2
SHMT1-207ENST00000580002 FOXR2Q6PJQ5 311 aa27.52■■■□□ 2
SHMT1-207ENST00000580002 HVCN1Q96D96 273 aa27.52■■■□□ 2
SHMT1-207ENST00000580002 INO80BQ9C086 356 aaPredicted RBP27.52■■■□□ 2
SHMT1-207ENST00000580002 GNAT1P11488 350 aa27.51■■□□□ 1.99
SHMT1-207ENST00000580002 PPP4R3CPQ6ZMV5 832 aa27.51■■□□□ 1.99
SHMT1-207ENST00000580002 HS2ST1Q7LGA3 356 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms