RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 RNF169Q8NCN4 708 aa18.63■□□□□ 0.57
VPS53-218ENST00000575207 MTMR8Q96EF0 704 aa18.63■□□□□ 0.57
VPS53-218ENST00000575207 OSMRQ99650 979 aa18.63■□□□□ 0.57
VPS53-218ENST00000575207 ECHDC1Q9NTX5 307 aa18.63■□□□□ 0.57
VPS53-218ENST00000575207 AXIN1O15169 862 aa18.62■□□□□ 0.57
VPS53-218ENST00000575207 GLUD1P00367 558 aa18.62■□□□□ 0.57
VPS53-218ENST00000575207 CEACAM1P13688 526 aa18.62■□□□□ 0.57
VPS53-218ENST00000575207 ZSCAN20P17040 1043 aaPredicted RBP18.62■□□□□ 0.57
VPS53-218ENST00000575207 KLRC1P26715 233 aa18.62■□□□□ 0.57
VPS53-218ENST00000575207 NLRX1Q86UT6 975 aa18.62■□□□□ 0.57
VPS53-218ENST00000575207 PNMA1Q8ND90 353 aa18.62■□□□□ 0.57
VPS53-218ENST00000575207 PRKD2Q9BZL6 878 aa18.62■□□□□ 0.57
VPS53-218ENST00000575207 NRDE2Q9H7Z3 1164 aa18.62■□□□□ 0.57
VPS53-218ENST00000575207 ZDHHC7Q9NXF8 308 aa18.62■□□□□ 0.57
VPS53-218ENST00000575207 TEX28O15482 410 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 EPN2O95208 641 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 C1RP00736 705 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 SSBP05455 408 aaKnown RBP eCLIP18.61■□□□□ 0.57
VPS53-218ENST00000575207 FSHRP23945 695 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 SATB1Q01826 763 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 C19orf57Q0VDD7 668 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 KIZQ2M2Z5 673 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 ZMYM1Q5SVZ6 1142 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 SH3PXD2AQ5TCZ1 1133 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 PCNX4Q63HM2 1172 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 PLEKHA4Q9H4M7 779 aa18.61■□□□□ 0.57
VPS53-218ENST00000575207 ZBTB5O15062 677 aa18.6■□□□□ 0.57
VPS53-218ENST00000575207 PAPSS2O95340 614 aaPredicted RBP18.6■□□□□ 0.57
VPS53-218ENST00000575207 RLBP1P12271 317 aa18.6■□□□□ 0.57
VPS53-218ENST00000575207 TROAPQ12815 778 aa18.6■□□□□ 0.57
VPS53-218ENST00000575207 CEP68Q76N32 757 aa18.6■□□□□ 0.57
VPS53-218ENST00000575207 PLPPR4Q7Z2D5 763 aa18.6■□□□□ 0.57
VPS53-218ENST00000575207 RPS6KC1Q96S38 1066 aa18.6■□□□□ 0.57
VPS53-218ENST00000575207 AZI2Q9H6S1 392 aa18.6■□□□□ 0.57
VPS53-218ENST00000575207 HEBP1Q9NRV9 189 aa18.6■□□□□ 0.57
VPS53-218ENST00000575207 SPAG17Q6Q759 2223 aa18.59■□□□□ 0.57
VPS53-218ENST00000575207 DOCK6Q96HP0 2047 aa18.59■□□□□ 0.57
VPS53-218ENST00000575207 GPR32O75388 356 aa18.59■□□□□ 0.57
VPS53-218ENST00000575207 MYBP10242 640 aa18.59■□□□□ 0.57
VPS53-218ENST00000575207 CSRP1P21291 193 aaKnown RBP18.59■□□□□ 0.57
VPS53-218ENST00000575207 RAP1GAPP47736 663 aa18.59■□□□□ 0.57
VPS53-218ENST00000575207 SLC11A1P49279 550 aa18.59■□□□□ 0.57
VPS53-218ENST00000575207 GPRASP2Q96D09 838 aa18.59■□□□□ 0.57
VPS53-218ENST00000575207 CDHR1Q96JP9 859 aa18.59■□□□□ 0.57
VPS53-218ENST00000575207 PHF20Q9BVI0 1012 aa18.59■□□□□ 0.57
VPS53-218ENST00000575207 ADAMTS10Q9H324 1103 aa18.59■□□□□ 0.57
VPS53-218ENST00000575207 ACACAQ13085 2346 aa18.58■□□□□ 0.57
VPS53-218ENST00000575207 K7ESF4 209 aa18.58■□□□□ 0.56
VPS53-218ENST00000575207 MAN2B1O00754 1011 aa18.58■□□□□ 0.56
VPS53-218ENST00000575207 ALX1Q15699 326 aa18.58■□□□□ 0.56
VPS53-218ENST00000575207 FGF13Q92913 245 aa18.58■□□□□ 0.56
VPS53-218ENST00000575207 LMAN1LQ9HAT1 526 aa18.58■□□□□ 0.56
VPS53-218ENST00000575207 RXFP1Q9HBX9 757 aa18.58■□□□□ 0.56
VPS53-218ENST00000575207 TBC1D13Q9NVG8 400 aa18.58■□□□□ 0.56
VPS53-218ENST00000575207 NDRG2Q9UN36 371 aaKnown RBP18.58■□□□□ 0.56
VPS53-218ENST00000575207 SSX2IPQ9Y2D8 614 aa18.58■□□□□ 0.56
VPS53-218ENST00000575207 PCDHGA5Q9Y5G8 931 aa18.58■□□□□ 0.56
VPS53-218ENST00000575207 CFAP46Q8IYW2 2715 aa18.58■□□□□ 0.56
VPS53-218ENST00000575207 ZNF462Q96JM2 2506 aa18.57■□□□□ 0.56
VPS53-218ENST00000575207 HYAL3O43820 417 aaPredicted RBP18.57■□□□□ 0.56
VPS53-218ENST00000575207 HMMRO75330 724 aa18.57■□□□□ 0.56
VPS53-218ENST00000575207 PARP1P09874 1014 aaKnown RBP18.57■□□□□ 0.56
VPS53-218ENST00000575207 TRAF1Q13077 416 aa18.57■□□□□ 0.56
VPS53-218ENST00000575207 GAS6Q14393 721 aa18.57■□□□□ 0.56
VPS53-218ENST00000575207 DAB2IPQ5VWQ8 1189 aa18.57■□□□□ 0.56
VPS53-218ENST00000575207 SIRT2Q8IXJ6 389 aa18.57■□□□□ 0.56
VPS53-218ENST00000575207 KXD1Q9BQD3 176 aa18.57■□□□□ 0.56
VPS53-218ENST00000575207 DNAJB4Q9UDY4 337 aa18.57■□□□□ 0.56
VPS53-218ENST00000575207 C4orf47A7E2U8 309 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 TRIM6-TRIM34B2RNG4 842 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 SOD2P04179 222 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 HOXA6P31267 233 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 STAT5BP51692 787 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 AK2P54819 239 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 VPS53Q5VIR6 699 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 LARP1BQ659C4 914 aaKnown RBP18.56■□□□□ 0.56
VPS53-218ENST00000575207 SPEM1Q8N4L4 309 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 PPP1R16BQ96T49 567 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 SMOC1Q9H4F8 434 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 VPS45Q9NRW7 570 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 KLK13Q9UKR3 277 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 MTCL1Q9Y4B5 1905 aaKnown RBP18.56■□□□□ 0.56
VPS53-218ENST00000575207 EVPLQ92817 2033 aa18.56■□□□□ 0.56
VPS53-218ENST00000575207 FAM221BA6H8Z2 402 aa18.55■□□□□ 0.56
VPS53-218ENST00000575207 C2CD2LO14523 706 aa18.55■□□□□ 0.56
VPS53-218ENST00000575207 URODP06132 367 aa18.55■□□□□ 0.56
VPS53-218ENST00000575207 SPATA31D3P0C874 917 aa18.55■□□□□ 0.56
VPS53-218ENST00000575207 PCP11498 1178 aaKnown RBP18.55■□□□□ 0.56
VPS53-218ENST00000575207 SPATA31D4Q6ZUB0 917 aa18.55■□□□□ 0.56
VPS53-218ENST00000575207 DNASE1L2Q92874 299 aa18.55■□□□□ 0.56
VPS53-218ENST00000575207 ZKSCAN3Q9BRR0 538 aa18.55■□□□□ 0.56
VPS53-218ENST00000575207 EDEM2Q9BV94 578 aa18.55■□□□□ 0.56
VPS53-218ENST00000575207 KAT14Q9H8E8 782 aa18.55■□□□□ 0.56
VPS53-218ENST00000575207 GAS2O43903 313 aaKnown RBP18.54■□□□□ 0.56
VPS53-218ENST00000575207 B4GALT3O60512 393 aa18.54■□□□□ 0.56
VPS53-218ENST00000575207 PLA2G2AP14555 144 aa18.54■□□□□ 0.56
VPS53-218ENST00000575207 MPLP40238 635 aa18.54■□□□□ 0.56
VPS53-218ENST00000575207 SLC26A2P50443 739 aa18.54■□□□□ 0.56
VPS53-218ENST00000575207 HEATR6Q6AI08 1181 aaKnown RBP18.54■□□□□ 0.56
VPS53-218ENST00000575207 KIAA1211LQ6NV74 962 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms