RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 DDX53Q86TM3 631 aaKnown RBP23.63■■□□□ 1.37
VPS53-216ENST00000574029 VPS52Q8N1B4 723 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 NLRP4Q96MN2 994 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 NRDE2Q9H7Z3 1164 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 IFT122Q9HBG6 1241 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 CYP26B1Q9NR63 512 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 TBC1D13Q9NVG8 400 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 VAV3Q9UKW4 847 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 IRAK3Q9Y616 596 aa23.63■■□□□ 1.37
VPS53-216ENST00000574029 MEIS3P2A8K0S8 358 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 OFD1O75665 1012 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 SP100P23497 879 aaPredicted RBP23.62■■□□□ 1.37
VPS53-216ENST00000574029 POLGP54098 1239 aaPredicted RBP23.62■■□□□ 1.37
VPS53-216ENST00000574029 STK3Q13188 491 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 LONRF3Q496Y0 759 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 NOMO2Q5JPE7 1267 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 ERICH6BQ5W0A0 696 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 CATSPER4Q7RTX7 472 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 IGSF21Q96ID5 467 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 FAM20AQ96MK3 541 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 POMKQ9H5K3 350 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 KCNMB3Q9NPA1 279 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 KCNJ14Q9UNX9 436 aa23.62■■□□□ 1.37
VPS53-216ENST00000574029 GALTP07902 379 aa23.61■■□□□ 1.37
VPS53-216ENST00000574029 CTSAP10619 480 aa23.61■■□□□ 1.37
VPS53-216ENST00000574029 CA8P35219 290 aa23.61■■□□□ 1.37
VPS53-216ENST00000574029 QARSP47897 775 aaKnown RBP23.61■■□□□ 1.37
VPS53-216ENST00000574029 TCF15Q12870 199 aa23.61■■□□□ 1.37
VPS53-216ENST00000574029 GIT2Q14161 759 aa23.61■■□□□ 1.37
VPS53-216ENST00000574029 LETM2Q2VYF4 491 aa23.61■■□□□ 1.37
VPS53-216ENST00000574029 PPP4R3AQ6IN85 833 aa23.61■■□□□ 1.37
VPS53-216ENST00000574029 PHF20Q9BVI0 1012 aa23.61■■□□□ 1.37
VPS53-216ENST00000574029 AGPAT5Q9NUQ2 364 aa23.61■■□□□ 1.37
VPS53-216ENST00000574029 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.6■■□□□ 1.37
VPS53-216ENST00000574029 DKC1O60832 514 aaKnown RBP eCLIP23.6■■□□□ 1.373e-11■■■□□ 15.6
VPS53-216ENST00000574029 MTHFRP42898 656 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 VCPP55072 806 aaKnown RBP23.6■■□□□ 1.37
VPS53-216ENST00000574029 NPEPPSP55786 919 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 ZBTB33Q86T24 672 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 BCL7CQ8WUZ0 217 aaPredicted RBP23.6■■□□□ 1.37
VPS53-216ENST00000574029 AUTS2Q8WXX7 1259 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 PGBD4Q96DM1 585 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 PHOX2BQ99453 314 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 TSHZ2Q9NRE2 1034 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 DZANK1Q9NVP4 752 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 WRAP73Q9P2S5 460 aaPredicted RBP23.6■■□□□ 1.37
VPS53-216ENST00000574029 INPP5FQ9Y2H2 1132 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 PPME1Q9Y570 386 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 COL4A3BPQ9Y5P4 624 aa23.6■■□□□ 1.37
VPS53-216ENST00000574029 C2CD4DB7Z1M9 353 aa23.59■■□□□ 1.37
VPS53-216ENST00000574029 P4HBP07237 508 aaKnown RBP23.59■■□□□ 1.37
VPS53-216ENST00000574029 GCFC2P16383 781 aaKnown RBP23.59■■□□□ 1.37
VPS53-216ENST00000574029 NEK8Q86SG6 692 aa23.59■■□□□ 1.37
VPS53-216ENST00000574029 EXOC8Q8IYI6 725 aa23.59■■□□□ 1.37
VPS53-216ENST00000574029 ZNF579Q8NAF0 562 aaKnown RBP23.59■■□□□ 1.37
VPS53-216ENST00000574029 SLC22A17Q8WUG5 538 aa23.59■■□□□ 1.37
VPS53-216ENST00000574029 SLC7A3Q8WY07 619 aa23.59■■□□□ 1.37
VPS53-216ENST00000574029 RIPOR3Q96MK2 946 aa23.59■■□□□ 1.37
VPS53-216ENST00000574029 DHX33Q9H6R0 707 aaKnown RBP23.59■■□□□ 1.37
VPS53-216ENST00000574029 PDRG1Q9NUG6 133 aa23.59■■□□□ 1.37
VPS53-216ENST00000574029 DNAJB4Q9UDY4 337 aa23.59■■□□□ 1.37
VPS53-216ENST00000574029 PCDHB2Q9Y5E7 798 aa23.59■■□□□ 1.37
VPS53-216ENST00000574029 CCDC194A0A1B0GVG4 234 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 AVPR2P30518 371 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 SLC11A1P49279 550 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 RNASELQ05823 741 aaKnown RBP23.58■■□□□ 1.37
VPS53-216ENST00000574029 SCRN1Q12765 414 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 RARS2Q5T160 578 aaKnown RBP23.58■■□□□ 1.37
VPS53-216ENST00000574029 AGMOQ6ZNB7 445 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 SRGAP1Q7Z6B7 1085 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 MRPL10Q7Z7H8 261 aaKnown RBP23.58■■□□□ 1.37
VPS53-216ENST00000574029 KREMEN2Q8NCW0 462 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 PRPF31Q8WWY3 499 aaKnown RBP23.58■■□□□ 1.37
VPS53-216ENST00000574029 HAS1Q92839 578 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 CEP170P1Q96L14 293 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 VN1R3Q9BXE9 311 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 SLKQ9H2G2 1235 aaPredicted RBP23.58■■□□□ 1.37
VPS53-216ENST00000574029 SORCS3Q9UPU3 1222 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 ARID2Q68CP9 1835 aa23.58■■□□□ 1.37
VPS53-216ENST00000574029 STK36Q9NRP7 1315 aa23.58■■□□□ 1.36
VPS53-216ENST00000574029 TBX3O15119 743 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 B4GALT3O60512 393 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 CDKL5O76039 1030 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 WEE2P0C1S8 567 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 EPCAMP16422 314 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 RFC5P40937 340 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 KIAA1841Q6NSI8 718 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 ZNF280BQ86YH2 543 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 C4orf19Q8IY42 314 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 UBALD2Q8IYN6 164 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 C12orf76Q8N812 135 aaPredicted RBP23.57■■□□□ 1.36
VPS53-216ENST00000574029 TMEM87AQ8NBN3 555 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 DENND4AQ7Z401 1863 aa23.57■■□□□ 1.36
VPS53-216ENST00000574029 HOXA11P31270 313 aaPredicted RBP23.56■■□□□ 1.36
VPS53-216ENST00000574029 LAMTOR4Q0VGL1 99 aa23.56■■□□□ 1.36
VPS53-216ENST00000574029 MTMR3Q13615 1198 aa23.56■■□□□ 1.36
VPS53-216ENST00000574029 EPHA7Q15375 998 aa23.56■■□□□ 1.36
VPS53-216ENST00000574029 ATAT1Q5SQI0 421 aa23.56■■□□□ 1.36
VPS53-216ENST00000574029 UBXN11Q5T124 520 aa23.56■■□□□ 1.36
VPS53-216ENST00000574029 KANK3Q6NY19 840 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 147.3 ms