RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 NAP1L3Q99457 506 aaPredicted RBP18.47■□□□□ 0.55
VPS53-215ENST00000573028 PAGR1Q9BTK6 254 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 GPR88Q9GZN0 384 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 CARD9Q9H257 536 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 SEMA4AQ9H3S1 761 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 ZBTB21Q9ULJ3 1066 aa18.47■□□□□ 0.55
VPS53-215ENST00000573028 BTAF1O14981 1849 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 RGS16O15492 202 aaPredicted RBP18.46■□□□□ 0.55
VPS53-215ENST00000573028 HOXA10P31260 410 aaPredicted RBP18.46■□□□□ 0.55
VPS53-215ENST00000573028 KCNJ1P48048 391 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 OTOP1Q7RTM1 612 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 ZNF720Q7Z2F6 126 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 OLIG1Q8TAK6 271 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 ELMO3Q96BJ8 720 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 HSD17B14Q9BPX1 270 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 WRAP73Q9P2S5 460 aaPredicted RBP18.46■□□□□ 0.55
VPS53-215ENST00000573028 ANKRD62A6NC57 917 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 PPFIA2O75334 1257 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 CCDC172P0C7W6 258 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 DUPD1Q68J44 220 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 HHIPL2Q6UWX4 724 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 TAX1BP1Q86VP1 789 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 KAT5Q92993 513 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 MKL1Q969V6 931 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 RNF25Q96BH1 459 aaPredicted RBP18.46■□□□□ 0.55
VPS53-215ENST00000573028 AGPAT1Q99943 283 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 FAM198AQ9UFP1 575 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 PRR12Q9ULL5 1215 aa18.46■□□□□ 0.55
VPS53-215ENST00000573028 SLC26A4O43511 780 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 VIMP08670 466 aaKnown RBP18.45■□□□□ 0.54
VPS53-215ENST00000573028 SMTNP53814 917 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 TATDN2Q93075 761 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 CHMP6Q96FZ7 201 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 TMX4Q9H1E5 349 aaPredicted RBP18.45■□□□□ 0.54
VPS53-215ENST00000573028 RASAL2Q9UJF2 1139 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 SUGT1Q9Y2Z0 365 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 EMSYQ7Z589 1322 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 LOC102724159A0A0B4J2E5 919 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 MAPK7Q13164 816 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 PWP2Q15269 919 aaKnown RBP18.45■□□□□ 0.54
VPS53-215ENST00000573028 ANKRD20A8PQ5CZ79 823 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 SWT1Q5T5J6 900 aaKnown RBP18.45■□□□□ 0.54
VPS53-215ENST00000573028 TMEM179Q6ZVK1 233 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 CCDC105Q8IYK2 499 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 SMCHD1A6NHR9 2005 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 NCANO14594 1321 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 ARHGEF35A5YM69 484 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 K7ENM7 598 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 MAP2K2P36507 400 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 ECE1P42892 770 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 BFSP1Q12934 665 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 ARHGEF19Q8IW93 802 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 RPUSD2Q8IZ73 545 aaKnown RBP18.45■□□□□ 0.54
VPS53-215ENST00000573028 MGARPQ8TDB4 240 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 EPS8L3Q8TE67 593 aaKnown RBP18.45■□□□□ 0.54
VPS53-215ENST00000573028 PABPC3Q9H361 631 aaKnown RBP18.45■□□□□ 0.54
VPS53-215ENST00000573028 TDRD3Q9H7E2 651 aaKnown RBP18.45■□□□□ 0.54
VPS53-215ENST00000573028 ZDHHC18Q9NUE0 388 aa18.45■□□□□ 0.54
VPS53-215ENST00000573028 A0A1W2PRG0 241 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 TCRBV7S2A1N4TA0A589 114 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 BHMG1C9JSJ3 638 aaPredicted RBP18.44■□□□□ 0.54
VPS53-215ENST00000573028 KIAA0391O15091 583 aaKnown RBP18.44■□□□□ 0.54
VPS53-215ENST00000573028 EIF3DO15371 548 aaKnown RBP eCLIP18.44■□□□□ 0.54
VPS53-215ENST00000573028 RPL21P46778 160 aaKnown RBP18.44■□□□□ 0.54
VPS53-215ENST00000573028 NSMFQ6X4W1 530 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 HVCN1Q96D96 273 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 IGLV3-22A0A075B6J6 115 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 DRD4P21917 467 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 EIF3BP55884 814 aaKnown RBP18.44■□□□□ 0.54
VPS53-215ENST00000573028 BYSLQ13895 437 aaKnown RBP18.44■□□□□ 0.54
VPS53-215ENST00000573028 STXBP4Q6ZWJ1 553 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 OTUD6AQ7L8S5 288 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 UBL4BQ8N7F7 174 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 SEC14L1Q92503 715 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 NCAPGQ9BPX3 1015 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 GGT7Q9UJ14 662 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 DBR1Q9UK59 544 aaKnown RBP18.44■□□□□ 0.54
VPS53-215ENST00000573028 SPOPO43791 374 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 COMTP21964 271 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 CIITAP33076 1130 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 SCTRP47872 440 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 E2F5Q15329 346 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 NBPF9Q3BBW0 867 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 CCDC137Q6PK04 289 aaKnown RBP18.44■□□□□ 0.54
VPS53-215ENST00000573028 PRELID2Q8N945 189 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 ZNF622Q969S3 477 aaKnown RBP eCLIP18.44■□□□□ 0.548e-8■■■■□ 21.7
VPS53-215ENST00000573028 ZNF577Q9BSK1 485 aa18.44■□□□□ 0.54
VPS53-215ENST00000573028 DNAJC17Q9NVM6 304 aaKnown RBP18.44■□□□□ 0.54
VPS53-215ENST00000573028 POLRMTO00411 1230 aaKnown RBP18.43■□□□□ 0.54
VPS53-215ENST00000573028 HIP1RO75146 1068 aa18.43■□□□□ 0.54
VPS53-215ENST00000573028 ARP10275 920 aa18.43■□□□□ 0.54
VPS53-215ENST00000573028 BCRP11274 1271 aa18.43■□□□□ 0.54
VPS53-215ENST00000573028 RBM26Q5T8P6 1007 aaKnown RBP18.43■□□□□ 0.54
VPS53-215ENST00000573028 ZDHHC24Q6UX98 284 aa18.43■□□□□ 0.54
VPS53-215ENST00000573028 ZSWIM2Q8NEG5 633 aa18.43■□□□□ 0.54
VPS53-215ENST00000573028 PRMT1Q99873 361 aaKnown RBP18.43■□□□□ 0.54
VPS53-215ENST00000573028 ELAC2Q9BQ52 826 aaKnown RBP18.43■□□□□ 0.54
VPS53-215ENST00000573028 EPB41L4BQ9H329 900 aa18.43■□□□□ 0.54
VPS53-215ENST00000573028 INTS9Q9NV88 658 aaKnown RBP18.43■□□□□ 0.54
VPS53-215ENST00000573028 ADAMTSL1Q8N6G6 1762 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms