RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 BHMT2Q9H2M3 363 aa22.35■■□□□ 1.17
NUP88-204ENST00000572290 CWH43Q9H720 699 aa22.35■■□□□ 1.17
NUP88-204ENST00000572290 HCSTQ9UBK5 93 aa22.35■■□□□ 1.17
NUP88-204ENST00000572290 ZNF623O75123 536 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 ITGB1P05556 798 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 LAG3P18627 525 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 CDC25AP30304 524 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 HOXA11P31270 313 aaPredicted RBP22.34■■□□□ 1.17
NUP88-204ENST00000572290 MBTD1Q05BQ5 628 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 NCBP1Q09161 790 aaKnown RBP22.34■■□□□ 1.17
NUP88-204ENST00000572290 TJAP1Q5JTD0 557 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 ARL6IP4Q66PJ3 421 aaKnown RBP22.34■■□□□ 1.17
NUP88-204ENST00000572290 HELQQ8TDG4 1101 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 HLA-CQ95604 372 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 SNX21Q969T3 373 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 ASB2Q96Q27 587 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 NSUN3Q9H649 340 aaKnown RBP22.34■■□□□ 1.17
NUP88-204ENST00000572290 FOXD4L1Q9NU39 408 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 DNM3Q9UQ16 869 aa22.34■■□□□ 1.17
NUP88-204ENST00000572290 VWA3AA6NCI4 1184 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 DLL1O00548 723 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 TSPAN1O60635 241 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 SYT1P21579 422 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 AXLP30530 894 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 CSPP1Q1MSJ5 1256 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 LRRC55Q6ZSA7 311 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 COLGALT1Q8NBJ5 622 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 SPPL3Q8TCT6 385 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 LPPQ93052 612 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 PGBD4Q96DM1 585 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 MMTAG2Q9BU76 263 aaKnown RBP22.33■■□□□ 1.17
NUP88-204ENST00000572290 PCDHB2Q9Y5E7 798 aa22.33■■□□□ 1.17
NUP88-204ENST00000572290 LRRIQ4A6NIV6 560 aa22.32■■□□□ 1.16
NUP88-204ENST00000572290 E9PMD0 336 aa22.32■■□□□ 1.16
NUP88-204ENST00000572290 BMP15O95972 392 aa22.32■■□□□ 1.16
NUP88-204ENST00000572290 TFF2Q03403 129 aa22.32■■□□□ 1.16
NUP88-204ENST00000572290 AAK1Q2M2I8 961 aa22.32■■□□□ 1.16
NUP88-204ENST00000572290 LONRF3Q496Y0 759 aa22.32■■□□□ 1.16
NUP88-204ENST00000572290 TCEAL5Q5H9L2 206 aa22.32■■□□□ 1.16
NUP88-204ENST00000572290 UBXN11Q5T124 520 aa22.32■■□□□ 1.16
NUP88-204ENST00000572290 RSPH1Q8WYR4 309 aa22.32■■□□□ 1.16
NUP88-204ENST00000572290 MRPL9Q9BYD2 267 aaKnown RBP22.32■■□□□ 1.16
NUP88-204ENST00000572290 TRANK1O15050 2925 aa22.32■■□□□ 1.16
NUP88-204ENST00000572290 LOXHD1Q8IVV2 1947 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 CSPG5O95196 566 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 EYA4O95677 639 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 ZRSR1Q15695 479 aaKnown RBP22.31■■□□□ 1.16
NUP88-204ENST00000572290 AMHR2Q16671 573 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 NOTUMQ6P988 496 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 GLB1LQ6UWU2 654 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 ZBTB8OSQ8IWT0 167 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 THNSL1Q8IYQ7 743 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 POF1BQ8WVV4 589 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 SYMPKQ92797 1274 aaKnown RBP22.31■■□□□ 1.16
NUP88-204ENST00000572290 CCDC51Q96ER9 411 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 COL25A1Q9BXS0 654 aaPredicted RBP22.31■■□□□ 1.16
NUP88-204ENST00000572290 UNC80Q8N2C7 3258 aa22.31■■□□□ 1.16
NUP88-204ENST00000572290 MEIS3P2A8K0S8 358 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 FGF18O76093 207 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 DNAJB1P25685 340 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 CAMK1Q14012 370 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 SF3A1Q15459 793 aaKnown RBP22.3■■□□□ 1.16
NUP88-204ENST00000572290 KCNT2Q6UVM3 1135 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 MRPL10Q7Z7H8 261 aaKnown RBP22.3■■□□□ 1.16
NUP88-204ENST00000572290 CNNM3Q8NE01 707 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 BSNDQ8WZ55 320 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 CPB2Q96IY4 423 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 ZNF558Q96NG5 402 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 C2orf40Q9H1Z8 148 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 PRUNE2Q8WUY3 3088 aa22.3■■□□□ 1.16
NUP88-204ENST00000572290 OFD1O75665 1012 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 ARF4P18085 180 aaPredicted RBP22.29■■□□□ 1.16
NUP88-204ENST00000572290 NAMPTP43490 491 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 UBE3AQ05086 875 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 RESTQ13127 1097 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 PPP2R5AQ15172 486 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 HYIQ5T013 277 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 CDCA2Q69YH5 1023 aaPredicted RBP22.29■■□□□ 1.16
NUP88-204ENST00000572290 AGMOQ6ZNB7 445 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 HSCBQ8IWL3 235 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 KIFAP3Q92845 792 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 IFT74Q96LB3 600 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 AK8Q96MA6 479 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 NT5C3AQ9H0P0 336 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 CSRNP2Q9H175 543 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 UBE2ZQ9H832 354 aaPredicted RBP22.29■■□□□ 1.16
NUP88-204ENST00000572290 PRMT7Q9NVM4 692 aaPredicted RBP22.29■■□□□ 1.16
NUP88-204ENST00000572290 INPP5FQ9Y2H2 1132 aa22.29■■□□□ 1.16
NUP88-204ENST00000572290 B4GALT5O43286 388 aa22.28■■□□□ 1.16
NUP88-204ENST00000572290 NCLP19338 710 aaKnown RBP22.28■■□□□ 1.16
NUP88-204ENST00000572290 PPM1AP35813 382 aa22.28■■□□□ 1.16
NUP88-204ENST00000572290 PLCB3Q01970 1234 aa22.28■■□□□ 1.16
NUP88-204ENST00000572290 NOMO2Q5JPE7 1267 aa22.28■■□□□ 1.16
NUP88-204ENST00000572290 PPP4R3CPQ6ZMV5 832 aa22.28■■□□□ 1.16
NUP88-204ENST00000572290 KCNK18Q7Z418 384 aa22.28■■□□□ 1.16
NUP88-204ENST00000572290 CABP7Q86V35 215 aa22.28■■□□□ 1.16
NUP88-204ENST00000572290 KCTD17Q8N5Z5 321 aa22.28■■□□□ 1.16
NUP88-204ENST00000572290 DEPTORQ8TB45 409 aa22.28■■□□□ 1.16
NUP88-204ENST00000572290 CDK5RAP3Q96JB5 506 aa22.28■■□□□ 1.16
NUP88-204ENST00000572290 PRIMPOLQ96LW4 560 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms