RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TFDP1Q14186 410 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 PPP2R5AQ15172 486 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 PCBP1Q15365 356 aaKnown RBP eCLIP22.81■■□□□ 1.24
VPS53-210ENST00000571456 TRAF7Q6Q0C0 670 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 DRC1Q96MC2 740 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 SH2D3AQ9BRG2 576 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 XPNPEP1Q9NQW7 623 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 CDY2AQ9Y6F7 541 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 SPTBN4Q9H254 2564 aa22.81■■□□□ 1.24
VPS53-210ENST00000571456 CXCL10P02778 98 aa22.8■■□□□ 1.24
VPS53-210ENST00000571456 PTCRAQ6ISU1 281 aaPredicted RBP22.8■■□□□ 1.24
VPS53-210ENST00000571456 RINT1Q6NUQ1 792 aa22.8■■□□□ 1.24
VPS53-210ENST00000571456 SV2BQ7L1I2 683 aa22.8■■□□□ 1.24
VPS53-210ENST00000571456 KCNK18Q7Z418 384 aa22.8■■□□□ 1.24
VPS53-210ENST00000571456 TMEM87AQ8NBN3 555 aa22.8■■□□□ 1.24
VPS53-210ENST00000571456 APBB2Q92870 758 aa22.8■■□□□ 1.24
VPS53-210ENST00000571456 BMP2KQ9NSY1 1161 aaPredicted RBP22.8■■□□□ 1.24
VPS53-210ENST00000571456 BLOC1S4Q9NUP1 217 aa22.8■■□□□ 1.24
VPS53-210ENST00000571456 COL4A3BPQ9Y5P4 624 aa22.8■■□□□ 1.24
VPS53-210ENST00000571456 MYH11P35749 1972 aa22.8■■□□□ 1.24
VPS53-210ENST00000571456 EFCAB14O75071 495 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 CHRNA1P02708 482 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 SCP2P22307 547 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 ARL2P36404 184 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 GPC3P51654 580 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 AMPD3Q01432 767 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 MKRN4PQ13434 485 aaPredicted RBP22.79■■□□□ 1.24
VPS53-210ENST00000571456 C1orf186Q6ZWK4 172 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 CCDC34Q96HJ3 373 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 PLIN2Q99541 437 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 NFKBIZQ9BYH8 718 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 GCOM2Q9BZD3 368 aaPredicted RBP22.79■■□□□ 1.24
VPS53-210ENST00000571456 KCNH3Q9ULD8 1083 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 ODF2LQ9ULJ1 636 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 PHLPP2Q6ZVD8 1323 aa22.79■■□□□ 1.24
VPS53-210ENST00000571456 GPR32O75388 356 aa22.78■■□□□ 1.24
VPS53-210ENST00000571456 SSBP05455 408 aaKnown RBP eCLIP22.78■■□□□ 1.24
VPS53-210ENST00000571456 CTSHP09668 335 aa22.78■■□□□ 1.24
VPS53-210ENST00000571456 NLRP11P59045 1033 aaKnown RBP22.78■■□□□ 1.24
VPS53-210ENST00000571456 TSHZ1Q6ZSZ6 1077 aa22.78■■□□□ 1.24
VPS53-210ENST00000571456 RHPN2Q8IUC4 686 aa22.78■■□□□ 1.24
VPS53-210ENST00000571456 PRPF31Q8WWY3 499 aaKnown RBP22.78■■□□□ 1.24
VPS53-210ENST00000571456 MRPS27Q92552 414 aaKnown RBP22.78■■□□□ 1.24
VPS53-210ENST00000571456 ZBTB10Q96DT7 871 aa22.78■■□□□ 1.24
VPS53-210ENST00000571456 IFT74Q96LB3 600 aa22.78■■□□□ 1.24
VPS53-210ENST00000571456 GBP4Q96PP9 640 aa22.78■■□□□ 1.24
VPS53-210ENST00000571456 TNMDQ9H2S6 317 aa22.78■■□□□ 1.24
VPS53-210ENST00000571456 SIP14410 1827 aa22.78■■□□□ 1.24
VPS53-210ENST00000571456 A0A087WWV3 80 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 LCHNA4D1U4 455 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 GRXCR2A6NFK2 248 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 BAIAP3O94812 1187 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 VTNP04004 478 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 EIF4BP23588 611 aaKnown RBP22.77■■□□□ 1.24
VPS53-210ENST00000571456 LAMTOR4Q0VGL1 99 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 NAALADL2Q58DX5 795 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 FBXO47Q5MNV8 452 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 FAM102BQ5T8I3 360 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 SRGAP1Q7Z6B7 1085 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 NLRP7Q8WX94 980 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 SEPT8Q92599 483 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 TMEM143Q96AN5 459 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 SCLT1Q96NL6 688 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 ADAMTS10Q9H324 1103 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 HPSEQ9Y251 543 aa22.77■■□□□ 1.24
VPS53-210ENST00000571456 GPR182O15218 404 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 ABCD1P33897 745 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 PHKA2P46019 1235 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 KCNJ6P48051 423 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 E2F4Q16254 413 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 PUS10Q3MIT2 529 aaKnown RBP22.76■■□□□ 1.23
VPS53-210ENST00000571456 PLEKHG4Q58EX7 1191 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 CNKSR3Q6P9H4 555 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 GPBP1Q86WP2 473 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 IFNLR1Q8IU57 520 aaPredicted RBP22.76■■□□□ 1.23
VPS53-210ENST00000571456 PDILTQ8N807 584 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 CHAMP1Q96JM3 812 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 FTHL17Q9BXU8 183 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 POLR3FQ9H1D9 316 aaPredicted RBP22.76■■□□□ 1.23
VPS53-210ENST00000571456 C2orf40Q9H1Z8 148 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 GDPD2Q9HCC8 539 aa22.76■■□□□ 1.23
VPS53-210ENST00000571456 POLR2DO15514 142 aaKnown RBP22.75■■□□□ 1.23
VPS53-210ENST00000571456 NBNO60934 754 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 MYL1P05976 194 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 PFKFB1P16118 471 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 NAMPTP43490 491 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 TMEM62Q0P6H9 643 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 DRP2Q13474 957 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 MCM6Q14566 821 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 KIZQ2M2Z5 673 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 HFE2Q6ZVN8 426 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 CEP57L1Q8IYX8 460 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 RUSC1Q9BVN2 902 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 KBTBD4Q9NVX7 518 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 LARSQ9P2J5 1176 aaKnown RBP22.75■■□□□ 1.23
VPS53-210ENST00000571456 C5orf42Q9H799 3197 aa22.75■■□□□ 1.23
VPS53-210ENST00000571456 H0YCG3 227 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 RPS6KA5O75582 802 aa22.74■■□□□ 1.23
VPS53-210ENST00000571456 KRT18P05783 430 aaKnown RBP22.74■■□□□ 1.23
VPS53-210ENST00000571456 DARSP14868 501 aaKnown RBP22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms