RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 LRIG3Q6UXM1 1119 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 PCGF5Q86SE9 256 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 SULF1Q8IWU6 871 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 RNF25Q96BH1 459 aaPredicted RBP16.42■□□□□ 0.22
CIITA-204ENST00000570546 FAF2Q96CS3 445 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 RGL1Q9NZL6 768 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 LCMT1Q9UIC8 334 aa16.42■□□□□ 0.22
CIITA-204ENST00000570546 EIF3HO15372 352 aaKnown RBP eCLIP16.41■□□□□ 0.22
CIITA-204ENST00000570546 MYBL1P10243 752 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 TMEM35BQ8NCS4 154 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 REEP2Q9BRK0 252 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 PPP1R37O75864 691 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 CALB1P05937 261 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 UCHL3P15374 230 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 ANXA13P27216 316 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 MYO1EQ12965 1108 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 TRIM59Q8IWR1 403 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 C7orf31Q8N865 590 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 PSD3Q9NYI0 1048 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 TFR2Q9UP52 801 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 DAGLAQ9Y4D2 1042 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 AK9Q5TCS8 1911 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 MAP3K7O43318 606 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 NFIXQ14938 502 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 DNAAF3Q8N9W5 541 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 SLC35G2Q8TBE7 412 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 NLRP7Q8WX94 980 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 TRIM4Q9C037 500 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 SRGAP2BP0DMP2 458 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 H2AFXP16104 143 aaPredicted RBP16.41■□□□□ 0.22
CIITA-204ENST00000570546 SFNP31947 248 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 EPHA7Q15375 998 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 CDO1Q16878 200 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 FBXO33Q7Z6M2 555 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 C1orf54Q8WWF1 131 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 MYOM1P52179 1685 aa16.41■□□□□ 0.22
CIITA-204ENST00000570546 TMEM131LA2VDJ0 1609 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 BRAFP15056 766 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 MARK3P27448 753 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 MMGT1Q8N4V1 131 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 TGS1Q96RS0 853 aaKnown RBP16.4■□□□□ 0.22
CIITA-204ENST00000570546 PPP1R9AQ9ULJ8 1098 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 USH1CQ9Y6N9 552 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 MROH1Q8NDA8 1641 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 A0A0G2JND7 137 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 STK33Q9BYT3 514 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 AGXT2Q9BYV1 514 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 MAD2L2Q9UI95 211 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 TTC7AQ9ULT0 858 aaPredicted RBP16.4■□□□□ 0.22
CIITA-204ENST00000570546 GOLGA8MH3BSY2 632 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 TTI1O43156 1089 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 SLC26A4O43511 780 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 RTN2O75298 545 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 LRRC14Q15048 493 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 NAB2Q15742 525 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 SMIM5Q71RC9 77 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 TTC13Q8NBP0 860 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 TTC17Q96AE7 1141 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 PPP1R16BQ96T49 567 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 PNKPQ96T60 521 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 TRIM55Q9BYV6 548 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 SUGT1Q9Y2Z0 365 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 GPC4O75487 556 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 FGFR4P22455 802 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 PLA2G4AP47712 749 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 GALCP54803 685 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 TROAPQ12815 778 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 EAPPQ56P03 285 aaPredicted RBP16.4■□□□□ 0.22
CIITA-204ENST00000570546 SP8Q8IXZ3 490 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 RTKN2Q8IZC4 609 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.4■□□□□ 0.22
CIITA-204ENST00000570546 NLRP4Q96MN2 994 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 ERGIC2Q96RQ1 377 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 ANGPTL2Q9UKU9 493 aa16.4■□□□□ 0.22
CIITA-204ENST00000570546 CLDN3O15551 220 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 ATP5HO75947 161 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 ZNF667Q5HYK9 610 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 GSDMBQ8TAX9 411 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 ZNF473Q8WTR7 871 aaKnown RBP16.39■□□□□ 0.21
CIITA-204ENST00000570546 TRIM51Q9BSJ1 452 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 INTUQ9ULD6 942 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 MAGED2Q9UNF1 606 aaPredicted RBP16.39■□□□□ 0.21
CIITA-204ENST00000570546 FHOD1Q9Y613 1164 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 GOLGA8QA0A0J9YX86 632 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 GOLGA8OA6NCC3 632 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 GOLGA8NF8WBI6 632 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 PDHBP11177 359 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 SKIP12755 728 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 FXR2P51116 673 aaKnown RBP eCLIP16.39■□□□□ 0.21
CIITA-204ENST00000570546 PSMC5P62195 406 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 FAM47CQ5HY64 1035 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 PARP9Q8IXQ6 854 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 THNSL1Q8IYQ7 743 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 SYT2Q8N9I0 419 aaPredicted RBP16.39■□□□□ 0.21
CIITA-204ENST00000570546 IP6K2Q9UHH9 426 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 IPO11Q9UI26 975 aaKnown RBP16.39■□□□□ 0.21
CIITA-204ENST00000570546 KRT14P02533 472 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 MYBP10242 640 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 GNA15P30679 374 aa16.39■□□□□ 0.21
CIITA-204ENST00000570546 KRT17Q04695 432 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms